View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5450_low_17 (Length: 251)
Name: NF5450_low_17
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5450_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 26788958 - 26789159
Alignment:
| Q |
10 |
aagaatatgaagaattgatttttcccatgcataagatcatagcaaccacaaaatagaaggtagaatccaacaaaaagttctgacaggtgaatcctaatga |
109 |
Q |
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| T |
26788958 |
aagaatatgaagaattgatttttcccatgcataagatcatagcaaccacaaaatagaaggtagaatccaacaaaaagttctgacaggtgaatcctaatga |
26789057 |
T |
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| Q |
110 |
ttgaacacaaacaaaacaatatgtagataggtaagtacttaaatataactacaaaaagtgaattattaaatgctataagaaatactccatctggttttaa |
209 |
Q |
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| T |
26789058 |
ttgaacacaaacaaaacaatatgtagataggtaagtacttaaatataactacaaaaagtgaattattaaatgctataagaaatactccatctggttttaa |
26789157 |
T |
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| Q |
210 |
at |
211 |
Q |
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|| |
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| T |
26789158 |
at |
26789159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 26815797 - 26815980
Alignment:
| Q |
12 |
gaatatgaagaattgatttttcccatgcataagatcatagcaaccacaaaatagaaggtagaatccaacaaaaagttctgacaggtgaatcctaatgatt |
111 |
Q |
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| T |
26815797 |
gaatatgaagaagtaatttttcccatacataaaatcatagcagccacaaaataggaggtagaatccaacacaaagttctttcatgtgaatcctaatgatt |
26815896 |
T |
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| Q |
112 |
gaacacaaacaaaacaatatgtagataggtaagtactt--aaatataactacaaaaagtgaattattaaatgctataagaaatactc |
196 |
Q |
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| T |
26815897 |
gaacacaaac--aacaatatgtaggtaggtaagtacttaaaaatataacta-aaaaagcgaattattaaatgttatatgaaatactc |
26815980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 26782664 - 26782743
Alignment:
| Q |
27 |
atttttcccatgcataagatcatagcaaccacaaaatagaaggtagaatccaacaaaaagttctgacaggtgaatcctaa |
106 |
Q |
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| T |
26782664 |
atttttcccatacataagatcatagcagccacaaaataggaggtagaatccaacaaaaagttctgacatgtgaatcctaa |
26782743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 26829319 - 26829414
Alignment:
| Q |
12 |
gaatatgaagaattgatttttcccatgcataagatcatagcaaccacaaaatagaaggtagaatccaacaaaaagttctgacaggtgaatcctaat |
107 |
Q |
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| T |
26829319 |
gaatatgaagaagtgatttttcccatacataagatcatagcagccacataagaggaggtagaatccaacaacaagttctaacatgtgaatcctaat |
26829414 |
T |
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