View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5450_low_2 (Length: 495)
Name: NF5450_low_2
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5450_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 9 - 477
Target Start/End: Complemental strand, 37419760 - 37419292
Alignment:
| Q |
9 |
agcagagaccattttactagatgcacacgttgcgaaggctgatatttctctaataacttcaaaggtcaagagtgtgcaacaaatgggggtttttgttcgc |
108 |
Q |
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| T |
37419760 |
agcagagaccattttactagatgcacatgttgcgaaggctgatatttctctaataacttcaaaggtcaagagcgtgcaacaaatggggatttttgttcgc |
37419661 |
T |
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| Q |
109 |
aagcttttcagtattattaatgtggaatgtttacggctttatctgtatcttaatccggtatgttttcttgcttcaacctttaagttaatgttgataagaa |
208 |
Q |
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| T |
37419660 |
aagcttttcagtattattaatgtggaatgtttacggctttatctgtatcttaatccggtatgttttcttgcttcaacctttaagttaatgttgataagaa |
37419561 |
T |
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| Q |
209 |
gaaatttacattgttgtatcaaagtaaataactaaatttgtaattagtaagtaatatacaaggctcgggagactttttaataattgttctctggtgatta |
308 |
Q |
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| T |
37419560 |
gaaatttacattgttgtatcaaagtaaataactaaatttgtaattagtaagtaatatacaaggctcgggagactttttaataattgttctctggtgatta |
37419461 |
T |
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| Q |
309 |
aaatactttagcatattatatgattatgaagttttgaactttcactagtgaaaaattgtctaatggttcatttcatttactctatctcttggataatttc |
408 |
Q |
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| T |
37419460 |
aaatactttagcatattatatgattatgaagttttgaactttcactagtgataaattgtctaatggttcatttcatttactctatctcttggataatttc |
37419361 |
T |
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| Q |
409 |
ataatcgttgttctaacatgacaggctccctatgctttcctagatcctgcacaaatgaaacattgttta |
477 |
Q |
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| T |
37419360 |
ataatcgttgttctaacatgacaggctccctatgctttcctagatcctgcacaaatgaaatattgttta |
37419292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 139 - 317
Target Start/End: Complemental strand, 37428084 - 37427906
Alignment:
| Q |
139 |
ttacggctttatctgtatcttaatccggtatgttttcttgcttcaacctttaagttaatgttgataagaagaaatttacattgttgtatcaaagtaaata |
238 |
Q |
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| T |
37428084 |
ttacggctttatctgcatcttaatccggtatgttttcttgcttcaacctttaagttaatgttgataagaagaaatttacattgttgtatcaaagtaaata |
37427985 |
T |
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| Q |
239 |
actaaatttgtaattagtaagtaatatacaaggctcgggagactttttaataattgttctctggtgattaaaatacttt |
317 |
Q |
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| T |
37427984 |
actaaatttgtaattagtaagtaaaatacaaggctagggaaactttttaataattgttctctggtggttaaaacacttt |
37427906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 354 - 477
Target Start/End: Complemental strand, 37427902 - 37427777
Alignment:
| Q |
354 |
tagtgaaaaattgtctaatggttcatttcatttactctatctcttggataatttcataat-cgttgttctaacatg-acaggctccctatgctttcctag |
451 |
Q |
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| T |
37427902 |
tagtgaaaaattgtctaattgttcatttcatttactcaatctcttggataatttcttaatatgttgttctaacatgaacagattccatatgccttcctgg |
37427803 |
T |
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| Q |
452 |
atcctgcacaaatgaaacattgttta |
477 |
Q |
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| T |
37427802 |
atcttgcacaaatgaaacattgttta |
37427777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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