View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5450_low_22 (Length: 227)
Name: NF5450_low_22
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5450_low_22 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 17108761 - 17108981
Alignment:
| Q |
7 |
gataagtctggtatcgctagagttgagcaattgtaaacattgtatgatgcttccttcgcttggaactatgtcatcacttaagcaccttcggatcactggg |
106 |
Q |
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| T |
17108761 |
gataagtctggtatcgctagagttgagcaattgtaaacattgtatgatgcttccttcgcttggaactatgtcatcacttaagcaccttcggatcactggg |
17108860 |
T |
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| Q |
107 |
ctctctgggatagtggagattaggacggagttttatagggatgtgagctgctcttctccatctgttccatttccatccttggaaactttaatttttaagg |
206 |
Q |
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| T |
17108861 |
ctctctgggatagtggagattaggacggagttttatagggatgtgagctgctcttctccatctgttccatttccatccttggaaactttaatttttaagg |
17108960 |
T |
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| Q |
207 |
atatggatggatgcaaagatt |
227 |
Q |
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| T |
17108961 |
atatggatggatggaaagatt |
17108981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 27 - 219
Target Start/End: Original strand, 16977452 - 16977644
Alignment:
| Q |
27 |
agttgagcaattgtaaacattgtatgatgcttccttcgcttggaactatgtcatcacttaagcaccttcggatcactgggctctctgggatagtggagat |
126 |
Q |
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| T |
16977452 |
agttaagcaattgtgaaaactgtattttgcttccttcacttggagttatgtcatcactcaagcaccttcggattaccggactctctggaatagtggtgat |
16977551 |
T |
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| Q |
127 |
taggacggagttttatagggatgtgagctgctcttctccatctgttccatttccatccttggaaactttaatttttaaggatatggatggatg |
219 |
Q |
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| T |
16977552 |
tggtatggagttttatagggatgggagaagctctactgtatctattccatttccatccttggaaaccttaacttttaaggatatgaatggatg |
16977644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 219
Target Start/End: Original strand, 17029324 - 17029516
Alignment:
| Q |
27 |
agttgagcaattgtaaacattgtatgatgcttccttcgcttggaactatgtcatcacttaagcaccttcggatcactgggctctctgggatagtggagat |
126 |
Q |
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|||| ||||||||| || | ||||| |||||||||| |||||| |||||||||||| |||||||||||||| || | |||||||| ||||||| ||| |
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| T |
17029324 |
agttaagcaattgtgaaaactgtattttgcttccttcacttggagttatgtcatcactcaagcaccttcggattaccngactctctggaatagtggtgat |
17029423 |
T |
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| Q |
127 |
taggacggagttttatagggatgtgagctgctcttctccatctgttccatttccatccttggaaactttaatttttaaggatatggatggatg |
219 |
Q |
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| T |
17029424 |
tggtatggagttttatagggatgggagaagctctactgtatctattccatttccatccttggaaaccttaacttttaaggatatgaatggatg |
17029516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 27 - 219
Target Start/End: Original strand, 17047662 - 17047854
Alignment:
| Q |
27 |
agttgagcaattgtaaacattgtatgatgcttccttcgcttggaactatgtcatcacttaagcaccttcggatcactgggctctctgggatagtggagat |
126 |
Q |
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| T |
17047662 |
agttaagcaattgtgaaaactgtattttgcttccttcacttggagttatgtcatcactcaagcaccttcggattaccggactctctggaatagtggtgat |
17047761 |
T |
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| Q |
127 |
taggacggagttttatagggatgtgagctgctcttctccatctgttccatttccatccttggaaactttaatttttaaggatatggatggatg |
219 |
Q |
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| T |
17047762 |
tggtatggagttttacagggatgggagaagctctactgtatctattccatttccatccttggaaaccttaacttttaaggatatgaatggatg |
17047854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 196
Target Start/End: Original strand, 14297979 - 14298007
Alignment:
| Q |
168 |
ctgttccatttccatccttggaaacttta |
196 |
Q |
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| T |
14297979 |
ctgttccatttccatccttggaaacttta |
14298007 |
T |
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