View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5450_low_4 (Length: 440)
Name: NF5450_low_4
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5450_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 433
Target Start/End: Complemental strand, 8437924 - 8437504
Alignment:
| Q |
19 |
tatccgacagtgattaagttgtcgagacaaatgaatgatactgttatttttgcaaggatgaatggtgatgagaatgatagttgtatgcagtttttgaggg |
118 |
Q |
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| T |
8437924 |
tatccgacagtgattaagttgtcgagacaaatgaatgatactgttatttttgcaaggatgaatggtgatgagaatgatagttgtatgcagtttttgaggg |
8437825 |
T |
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| Q |
119 |
acatggaagttgttcaggttcctacttttttgttcattagagatggtaagattgctggtaggtatgttggttcagggaaaggtgaactcattggtgaaat |
218 |
Q |
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| T |
8437824 |
acatggaagttgttcaggttcctacttttttgttcattagagatggtaagattgctggtaggtatgttggttcagggaaaggtgaactcattggtgaaat |
8437725 |
T |
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| Q |
219 |
tctcaggtaccaaggagttcgtgttacttatt------aaatcaaatcaattgcttgttcatgtttgtattgatcataaacnnnnnnnnnnnnnnnnnnn |
312 |
Q |
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| T |
8437724 |
tctcaggtaccaaggagttcgtgttacttattaaaatcaaatcaaatcaattgcttgttcatgtgtgtattgatcataaacatatttttgtgagatatat |
8437625 |
T |
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| Q |
313 |
ngttaaggatttgtctcactgatttcatttttcgaaagatatatccttaccttttttgtttactggcaatatatttccttgagaacaaaactaaactgtt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437624 |
agttaaggatttgtctcactgatttcatttttcgaaagatatatccttatcttttttgtttactggcaatatatttccttgagaacaaaactaaactgtt |
8437525 |
T |
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| Q |
413 |
acacgtttcagcatacgccct |
433 |
Q |
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| T |
8437524 |
acacgtttcagcatacgccct |
8437504 |
T |
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