View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5450_low_7 (Length: 388)
Name: NF5450_low_7
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5450_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 42240308 - 42239959
Alignment:
| Q |
1 |
agaggattgccaataacaacaaagcgtgtgatgagatatatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggtgatccatttat |
100 |
Q |
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| T |
42240308 |
agaggattgccaataacaacaaagcgtgtgatgagatatatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggtgatccatttat |
42240209 |
T |
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| Q |
101 |
tgttgaagagaatccacatattcatgacccagatgatgtttttccaggtcttgttatcaagattaatcctttcaccaatcgatagaagtc---------- |
190 |
Q |
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| T |
42240208 |
tgtagaagagaatccacatattcatgacccagatgatgtttttccaggtcttgttatcaagattaatcctttcaccaatcgatagaagtcttgtcttttg |
42240109 |
T |
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| Q |
191 |
-----ttgttgaaggttacagtacaagatgtatgaagatactcttttcacagaaagaatagcctcttcattatacttgtgttccttcaaatcatgtaatc |
285 |
Q |
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| T |
42240108 |
gggtcttgttgaaggttaaagtaca--atgtatgaagatactcttttcacagaaagaatagcctcttaattatacttgtgttccttcaaatcatgtaatc |
42240011 |
T |
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| Q |
286 |
ctagataaaacatgttctgtttttatgatttgtacatataatatttgcttca |
337 |
Q |
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| T |
42240010 |
ctagataaaacatgttctgtttttatgatttgtacatataatatttgcttca |
42239959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 26303188 - 26303343
Alignment:
| Q |
18 |
aacaaagcgtgtgatgagatatatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggtgatccatttattgttgaagagaatccac |
117 |
Q |
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| T |
26303188 |
aacaaagtgtgtgatgagatatacgttgttggcgagggagagacacttcaaacaataagtgaaaagtgtggtgatccttatattgttgaagagaatccac |
26303287 |
T |
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| Q |
118 |
atattcatgacccagatgatgtttttccaggtcttgttatcaagattaatcctttc |
173 |
Q |
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| T |
26303288 |
atattcatgatcctgatgatgttttccctggccttgttatcaaaattaaccctttc |
26303343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 45924377 - 45924517
Alignment:
| Q |
19 |
acaaagcgtgtgatgagatatatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggtgatccatttattgttgaagagaatccaca |
118 |
Q |
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| T |
45924377 |
acaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccaca |
45924476 |
T |
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| Q |
119 |
tattcatgacccagatgatgtttttccaggtcttgttatca |
159 |
Q |
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| T |
45924477 |
tatccatgatccagatgatgttttccctggtcttgttatca |
45924517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 45936325 - 45936465
Alignment:
| Q |
19 |
acaaagcgtgtgatgagatatatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggtgatccatttattgttgaagagaatccaca |
118 |
Q |
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| T |
45936325 |
acaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccaca |
45936424 |
T |
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| Q |
119 |
tattcatgacccagatgatgtttttccaggtcttgttatca |
159 |
Q |
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| T |
45936425 |
tatccatgatccagatgatgttttccctggtcttgttatca |
45936465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 12631392 - 12631266
Alignment:
| Q |
39 |
tatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggtgatccatttattgttgaagagaatccacatattcatgacccagatgatg |
138 |
Q |
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| T |
12631392 |
tatgtggttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccctgatgatg |
12631293 |
T |
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| Q |
139 |
tttttccaggtcttgttatcaagatta |
165 |
Q |
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| T |
12631292 |
tcttccctggtcttgttatcaagatta |
12631266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 12618576 - 12618450
Alignment:
| Q |
39 |
tatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggtgatccatttattgttgaagagaatccacatattcatgacccagatgatg |
138 |
Q |
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| T |
12618576 |
tatgtagttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaacaatcctcatatacatgaccctgatgatg |
12618477 |
T |
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| Q |
139 |
tttttccaggtcttgttatcaagatta |
165 |
Q |
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| T |
12618476 |
tcttccctggccttgtcatcaaaatta |
12618450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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