View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5450_low_8 (Length: 353)
Name: NF5450_low_8
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5450_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 337
Target Start/End: Complemental strand, 34966605 - 34966285
Alignment:
| Q |
17 |
atgaagagcaaaaaacttggggaaattatgtctcaagtcccaaaaataacttggaaagttaccaaagattttaaattcctaatgtgcttagttcatgaga |
116 |
Q |
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| T |
34966605 |
atgaagagcaaaaaacttggggaaattatgtctcaagtcccaaaaataacttggaaagttaccaaagattttaaattcctaatgtgcttagttcatgaga |
34966506 |
T |
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| Q |
117 |
tggtgttgagactcaacaaccaactaagaggtttatatgtcttggaataaccatgttttgaaagccagagactacattcatgtgtgttgttgtgtgcatt |
216 |
Q |
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| T |
34966505 |
tggtgttgagactcaacaaccaactaagaggtttatatgtcttggaataaccatgttttgaaagccagagactacattcatgtgtgttgttgtgtgcatt |
34966406 |
T |
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| Q |
217 |
aagattatgaatacagctttgataatagttttaagagctatttatggcaataatggatacatcatttttcagtcatcaaaagaagactgcaaatcagcaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34966405 |
aagattatgaatacagctttgataatagttttaagagctatttatggcaataatggatacatcatttttcagtcatcaaaagaagactgcaaatcagcaa |
34966306 |
T |
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| Q |
317 |
gtccttgttttctgaatgaac |
337 |
Q |
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||||||||||||||||||||| |
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| T |
34966305 |
gtccttgttttctgaatgaac |
34966285 |
T |
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