View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5451-Insertion-1 (Length: 825)
Name: NF5451-Insertion-1
Description: NF5451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5451-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 664; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 7 - 800
Target Start/End: Original strand, 33344772 - 33345555
Alignment:
| Q |
7 |
aagccttaccaataccatcggaattaacaataccaggaaccatacaatcaggtttcccccacccaaaatcggactcattaaacggaaaattagtccaacc |
106 |
Q |
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| T |
33344772 |
aagccttaccaataccatcggaattaacaataccaggaaccatacaatcaggtttcccccacccaaaatcggactcattaaacggaaaattagtccaacc |
33344871 |
T |
|
| Q |
107 |
aacaacatacaaattcgggtcaccaccaaattgtccatttcttttggcaaaattataaaacttgtcccttaacaaattcatatcgttctgatttgctaca |
206 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33344872 |
aacaacatacaaattcggttcaccaccaaattgtccatttcttttagcaaaattataaaacttgtcccttaacaaattcatatctttctgatttgctaca |
33344971 |
T |
|
| Q |
207 |
taatcaagaactgatcttacatactcatcattcacctttttaacagcttccctcactttcccaaccacagaacaaaaaggcttgttcacaacatcatcaa |
306 |
Q |
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| T |
33344972 |
taatcaagaactgatcttacatactcatcattcacctttttaacagcttccctcactttcccaaccacagaacaaaaaggcttgttcacaacatcatcaa |
33345071 |
T |
|
| Q |
307 |
atgaacaagtttgtgtcactgtaggaaaagttgcattcccaaaataattcttaggcaaaagtggattcaacctatttctacaattaaccaaagttgttaa |
406 |
Q |
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| T |
33345072 |
atgaacaagtttgtgtcactgtaggaaaagttgcattcccaaaataattcataggcaaaggtggattcaacctatttctacaattaaccaaagttgttaa |
33345171 |
T |
|
| Q |
407 |
ccttgttggttggttccaatttccttcaaaacgcactttactaacacacctccataagtaaccactaataacctcaaaactagtataacctcgtaccttg |
506 |
Q |
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| T |
33345172 |
ccttgttggttggttccaatttccttcaaaacgcactttactaacacacctccataagtaaccactaataacctcaaaactagtataacctcgtaccttg |
33345271 |
T |
|
| Q |
507 |
ttttcattgttattggctttgttcttaagtttttcaacttgttttttggtgaatttcaacatggtagtggcaaagagtgggtttttactcaaacgtgttg |
606 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33345272 |
ttttcattgttattggctttgttcttaagtttttcaacttgttttttggtgaatttcaacatggtagtggcaaagagtgggtttttactcaaatgtgttg |
33345371 |
T |
|
| Q |
607 |
agttattactactattttcccaaaaggggtggtggagaaaactcatgatgatgaaaacgtgggtggaaaatggaagga-ttttgaatcccaacaatgtat |
705 |
Q |
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| T |
33345372 |
agttattactactattttccc-aaaggggtggtggagaaaactcatgatgatgaaaacgt-ggtggtaaat-gaaggatttttgaat-ccaacaatgttt |
33345467 |
T |
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| Q |
706 |
tatctaggaatggtatcaaaacttggaatctaaactctcacctttgggcaaggtttagcccatggagctaatgaaaacttaccagcagaagaacc |
800 |
Q |
| |
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| T |
33345468 |
tatctagaaatggtatc-aaactt-gaatctaaactctcaccttt-ggcaa-gtttagcccat-gagctaatgaaa--ctaccagcagaagaacc |
33345555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 7 - 668
Target Start/End: Original strand, 33333152 - 33333835
Alignment:
| Q |
7 |
aagccttaccaataccatcggaattaacaataccaggaaccatacaatcaggtttcccccacccaaaatcggactcattaaacggaaaattagtccaacc |
106 |
Q |
| |
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||||||||||||||| ||| |||||||||| || ||| ||| |||||||||||||||||| ||| ||| | ||||| ||| |||||||||||||||| |
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| T |
33333152 |
aagccttaccaatactatcagaattaacaaacccgggagccaaacaatcaggtttcccccatccataataagtctcataaaaaggaaaattagtccaact |
33333251 |
T |
|
| Q |
107 |
aacaacatacaaattcgggtcaccaccaaattgtccatttcttttggcaaaattataaaacttgtcccttaacaaattcatatcgttctgatttgctaca |
206 |
Q |
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| ||| | ||||||||||||||||||||||||||||||||| | || || || |||||||||||||||||| |||||||||| ||||||||| | ||| |
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| T |
33333252 |
ataaacgcaaaaattcgggtcaccaccaaattgtccatttcttctagcgaagttgtaaaacttgtcccttaaccaattcatatccttctgattttcaaca |
33333351 |
T |
|
| Q |
207 |
taatcaagaactgatcttacatactcatcattcacctttttaacagcttccctcactttcccaaccacagaacaaaaaggcttgttcacaacatcatcaa |
306 |
Q |
| |
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||||||||||| ||||||||||| |||| |||||||| | || |||||||||||||||||||||||| |||| || |||||||||||||||||||||| |
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| T |
33333352 |
taatcaagaacagatcttacatattcattgttcaccttctcaattgcttccctcactttcccaaccacataacataatggcttgttcacaacatcatcaa |
33333451 |
T |
|
| Q |
307 |
atgaacaagtttgtgtcac----tgtaggaaaagttgcattcccaaaataattcttaggcaaaagtggattcaacctatttctacaattaaccaaagttg |
402 |
Q |
| |
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|||||||| |||||||||| |||||||| ||||||| |||||||| ||||| || | | ||||||||||||| |||||||||||||||||||||| |
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| T |
33333452 |
atgaacaattttgtgtcaccgtacgtaggaaatgttgcatatccaaaatagttcttgggaagaggtggattcaacctgtttctacaattaaccaaagttg |
33333551 |
T |
|
| Q |
403 |
ttaaccttgttggttggttccaatttccttcaaaacgcactttactaacacacctccataagtaaccactaataacctcaaaactagtataacctcgtac |
502 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
33333552 |
ttaaccttgttggttggttccaatttccttcaacacgcactttacaaacacacctccatatgtaaccactaataacctcaaaactagtattacctcgtac |
33333651 |
T |
|
| Q |
503 |
cttgttt---------tcattgttattggctttgttcttaa--gtttttcaacttgttttttggtgaatttcaacatggtagtggcaaagagtgg-gt-- |
588 |
Q |
| |
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||||||| | |||||| || ||||||||||| | || |||||||||| | |||||||| ||||||||||||||||||||||||||| || |
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| T |
33333652 |
cttgttttggttttcattattgttgtttgctttgttcttgatcgtatttcaacttggtgtttggtgagtttcaacatggtagtggcaaagagtggtgtaa |
33333751 |
T |
|
| Q |
589 |
-----ttttactcaaacgtgttgagttattactactattttcccaaaaggggtggtggagaaaactcatgatgatgaaaacgtgg |
668 |
Q |
| |
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||||||||| | |||| ||||||| ||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
33333752 |
tggtgttttactcacatgtgtcgagttataactactaatttccc-aaagaggtggtggagaaaactcatgatgatgaaaacgtgg |
33333835 |
T |
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