View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5452-Insertion-1 (Length: 890)
Name: NF5452-Insertion-1
Description: NF5452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5452-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-136; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 451 - 832
Target Start/End: Complemental strand, 9575135 - 9574725
Alignment:
| Q |
451 |
gtaagctcggtgaaactgccactatttccagacatactcaaaatttactgcacactactaaagcaagaattcttaagcagttctagtatgcttaccgtgt |
550 |
Q |
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| T |
9575135 |
gtaagctcggtgaaactgacactatttccagacatactcaaaatttactgcacactactaaagcaagaattcttaagcagttctagcatgcttacggtgt |
9575036 |
T |
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| Q |
551 |
cggacaacaaaattgttgtccaaataacatttatgtggctattttagaagtttgttgggtacaagtgaaatccctt-------------aacaagagaaa |
637 |
Q |
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| T |
9575035 |
cggacaacaaaattgttgtccaaataacatttatgtggctattttagaagtttgtt-ggtacaagtgaaatcccttggtaagaaacaagaacaagagaaa |
9574937 |
T |
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| Q |
638 |
attgtgtaatatcaggcaaatccttgaacaattaaagaaagaaaaagaacgttgaa----------------aagagtgattgattggaagagagtccta |
721 |
Q |
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| T |
9574936 |
attgtgtaatatcaggcaaatccttgaacaattaaagaaagaaaaagaacgttgaaaacatgagaggataacaagagtgattgattggaagagagtcctc |
9574837 |
T |
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| Q |
722 |
caaagctaaacttccacttccttcccataaagtgtgatattgtcac-aagtttatggtcaaataaagtcacgtaaaagctattagaaattacattagtct |
820 |
Q |
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| T |
9574836 |
gaaagctaaacatccaattccttcttagaaagtgtgatattgtcacaaagtttatggtcaaataaagtcacgtaaaagttattagaaaatacattggtct |
9574737 |
T |
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| Q |
821 |
ttcagaaaagta |
832 |
Q |
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| T |
9574736 |
ttcagaaaagta |
9574725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 8 - 263
Target Start/End: Complemental strand, 9576316 - 9576063
Alignment:
| Q |
8 |
atttcatgagcatgtataggaggaatttcttatacaaggatcattcttgttataatgatacatctttcctcctatatctttcgtttggtgtcaagggtat |
107 |
Q |
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| T |
9576316 |
atttcatgagcatgtttaggaggaatttcttatacaaggatcattcttattacaatgatacatctttcctcctatatcattcgtttggtgtcaagggtat |
9576217 |
T |
|
| Q |
108 |
gtttcaacctacattgtattctctttctggtgggaggttagggaatatgacccaattagattggccaaattcatttcaagagcaaattttatttttatgt |
207 |
Q |
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| T |
9576216 |
gtttcaacctacattgtattctcttcctggtgggaggtttggggatatgacccaatt-gattggccaaattcatttcaagagc-aattttatttttatgt |
9576119 |
T |
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| Q |
208 |
ttgtgagtctagtaatgttaatggcatactttgtcttgaagatgcggggagagttg |
263 |
Q |
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| T |
9576118 |
ttgtgagtctagtagtgttaatggcatactttgtcttgaagatgcggggagagttg |
9576063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 261 - 347
Target Start/End: Complemental strand, 9575325 - 9575239
Alignment:
| Q |
261 |
ttggtgttaaaggtgatagatgttgttgtccgataatggtttattttgaggaaagccttttaccgattgaaggaataaacagttaag |
347 |
Q |
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| T |
9575325 |
ttggtgttaaaggtgatagatgttattgtccgataatggtttattttgaggaaagcgttttaccgattgaaggaataaacagttaag |
9575239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 768 - 825
Target Start/End: Original strand, 9578917 - 9578974
Alignment:
| Q |
768 |
aagtttatggtcaaataaagtcacgtaaaagctattagaaattacattagtctttcag |
825 |
Q |
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| T |
9578917 |
aagtttatggtcaaataaagtcacctacaagctataagaaaatacattggtctttcag |
9578974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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