View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5452-Insertion-3 (Length: 380)

Name: NF5452-Insertion-3
Description: NF5452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5452-Insertion-3
NF5452-Insertion-3
[»] chr3 (1 HSPs)
chr3 (6-380)||(81816-82189)


Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 6 - 380
Target Start/End: Complemental strand, 82189 - 81816
Alignment:
Q  6 cagaatgctatgccataggtgcaagacatgggaattgggaactcatagtatgactttctttactgattcttgaattttatgtgatgctatttatgcagtt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  82189 cagaatgctatgccataggtgcaagacatgggaattgggaactcatagtatgactttctttactgattcttgaattttatgtgatgctatttatgcagtt 82090  T
Q  106 agtgaaggggtctctgagtatagcatctttgttgctaatattaggcatattctagctttaaattgtagttctgtggttaactttgttaggaagcaagcga 205  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  82089 agtgaaggggtctctgagtttagcatctttgttgctaatattaggcatattctagctttaaattgtagttctgtggttaactttgttaggaagcaagcga 81990  T
Q  206 atatagatgctcaattttctagttagagtgacaagttcttgtgccagtcgacaagtttatatttatgcttctctttgtatttgattaaagaaatgagttg 305  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  81989 atatagatgctc-attttctagttagagtgacaagttcttgtgccagtcgacaagtttataattatgcttctctttgtatttgattaaagaaatgagttg 81891  T
Q  306 agtttgattggttaaaaacacttgattgaaatgacctattgtttatctttcttgtaatggcatttctttatcaat 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  81890 agtttgattggttaaaaacacttgattgaaatgacctattgtttatctttcttgtaatggcatttctttatcaat 81816  T

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