View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5452-Insertion-5 (Length: 103)
Name: NF5452-Insertion-5
Description: NF5452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5452-Insertion-5 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0513 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 3e-48; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 3e-48
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 50832624 - 50832720
Alignment:
| Q |
7 |
aaatcttctgctaaggctgactctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaacccaaca |
103 |
Q |
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| T |
50832624 |
aaatcttctgctaaggctgactctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaacccaaca |
50832720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 3e-48
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 50843229 - 50843133
Alignment:
| Q |
7 |
aaatcttctgctaaggctgactctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaacccaaca |
103 |
Q |
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| T |
50843229 |
aaatcttctgctaaggctgactctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaacccaaca |
50843133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 32792251 - 32792342
Alignment:
| Q |
11 |
cttctgctaaggctgactctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaacccaac |
102 |
Q |
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| T |
32792251 |
cttctgctaaggctggctctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcatgatttttcacaatcaaacccaac |
32792342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 5e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 5e-38
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 24534427 - 24534518
Alignment:
| Q |
11 |
cttctgctaaggctgactctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaacccaac |
102 |
Q |
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| T |
24534427 |
cttctgctaaggctggctctactgcaatttcttccaatctgtaggttttaaaaacaacggctccatcatgatttttcacaatcaaacccaac |
24534518 |
T |
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Target: chr6 (Bit Score: 53; Significance: 6e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 6e-22
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 17721083 - 17721171
Alignment:
| Q |
11 |
cttctgctaaggctgactctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaaccc |
99 |
Q |
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| T |
17721083 |
cttcagctaaggctggctccactgcaagttcttccaatgtgcaggctttgaaaacaatggcttcatcgtgatttttcacaatcaaaccc |
17721171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0513 (Bit Score: 48; Significance: 6e-19; HSPs: 1)
Name: scaffold0513
Description:
Target: scaffold0513; HSP #1
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 7574 - 7495
Alignment:
| Q |
20 |
aggctgactctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaaccc |
99 |
Q |
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|||||| ||| ||||||||||| ||||||||||||| ||| |||||||| ||||||| ||||||||||||||| |||||| |
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| T |
7574 |
aggctggctccactgcaatttcctccaatctgcaggctttgaaaacaacagctccattgtgatttttcacaattaaaccc |
7495 |
T |
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