View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5452_high_1 (Length: 422)
Name: NF5452_high_1
Description: NF5452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5452_high_1 |
 | |
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| [»] scaffold0513 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 3 - 406
Target Start/End: Original strand, 50832227 - 50832630
Alignment:
| Q |
3 |
atcacaactgattagcagattgaagnnnnnnnnnnaggttcaaacatttaattcattgaagaaaagctggttcacagcttctaaaaagaggttacaacag |
102 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50832227 |
atcacaactgattagcagattgaagttttttttttaggttcaaacatttaattcattgaagaaaagctggttcacagcttctaaaaagaggttacaacag |
50832326 |
T |
|
| Q |
103 |
tttcagttaccaaaagttcagtaggggcattccctatccaagctttaaatcctacagtcttagaaagaatggccatgtcacgtgcctctacattaaaaca |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50832327 |
tttcagttaccaaaagttcagtaggggcattccctatccaagctttaaatcctacagtcttagaaagaatggccatgtcacgtgcctctacattaaaaca |
50832426 |
T |
|
| Q |
203 |
tcttttaacatggataattctagcaatagtaaaagagtttagcagctgcttacagtctagtataacagtgtcaattccagcactgaaactctttcctaag |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50832427 |
tcttttaacatggataattctagcaatagtaaaagagtttagtagctgcttacagtctagtataacagtgtcaattccagcactgaaactctttcctaag |
50832526 |
T |
|
| Q |
303 |
atgcagtttactacattctcagcatcagatgaaattatcaagcttcagatacctctttctagagcagattgcacattgcagaccccatcgcacacctaaa |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
50832527 |
atgcagtttactacattctcagcatcagatgaaattatcaagcttcagatacctctttctagagcagattgcacattgcataccccatcgcacacctaaa |
50832626 |
T |
|
| Q |
403 |
tctt |
406 |
Q |
| |
|
|||| |
|
|
| T |
50832627 |
tctt |
50832630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 3 - 406
Target Start/End: Complemental strand, 50843626 - 50843223
Alignment:
| Q |
3 |
atcacaactgattagcagattgaagnnnnnnnnnnaggttcaaacatttaattcattgaagaaaagctggttcacagcttctaaaaagaggttacaacag |
102 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50843626 |
atcacaactgattagcagattgaagttttttttttaggttcaaacatttaattcattgaagaaaagctggttcacagcttctaaaaagaggttacaacag |
50843527 |
T |
|
| Q |
103 |
tttcagttaccaaaagttcagtaggggcattccctatccaagctttaaatcctacagtcttagaaagaatggccatgtcacgtgcctctacattaaaaca |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50843526 |
tttcagttaccaaaagttcagtaggggcattccctatccaagctttaaatcctacagtcttagaaagaatggccatgtcacgtgcctctacattaaaaca |
50843427 |
T |
|
| Q |
203 |
tcttttaacatggataattctagcaatagtaaaagagtttagcagctgcttacagtctagtataacagtgtcaattccagcactgaaactctttcctaag |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50843426 |
tcttttaacatggataattctagcaatagtaaaagagtttagtagctgcttacagtctagtataacagtgtcaattccagcactgaaactctttcctaag |
50843327 |
T |
|
| Q |
303 |
atgcagtttactacattctcagcatcagatgaaattatcaagcttcagatacctctttctagagcagattgcacattgcagaccccatcgcacacctaaa |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
50843326 |
atgcagtttactacattctcagcatcagatgaaattatcaagcttcagatacctctttctagagcagattgcacattgcataccccatcgcacacctaaa |
50843227 |
T |
|
| Q |
403 |
tctt |
406 |
Q |
| |
|
|||| |
|
|
| T |
50843226 |
tctt |
50843223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 3 - 402
Target Start/End: Original strand, 32791866 - 32792249
Alignment:
| Q |
3 |
atcacaactgattagcagattgaagnnnnnnnnnnaggttcaaacatttaattcattgaagaaaagctggttcacagcttctaaaaagaggttacaacag |
102 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32791866 |
atcacaactgattagcagattgaagatttttttttaggttcaaacatttaattcgttgaagaaaagctggttcacagcttctaaaaagaggttacaacag |
32791965 |
T |
|
| Q |
103 |
tttcagttaccaaaagttcagtaggggcattccctatccaagctttaaatcctacagtcttagaaagaatggccatgtcacgtgcctctacattaaaaca |
202 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
32791966 |
tt----------------cagtaggggcattccctatccaagctttaaatcctacagtcttagaaagaatggccatgtcatgtgcctctacattaaaaca |
32792049 |
T |
|
| Q |
203 |
tcttttaacatggataattctagcaatagtaaaagagtttagcagctgcttacagtctagtataacagtgtcaattccagcactgaaactctttcctaag |
302 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
32792050 |
tctttttacatggataattctagcaatagtaaaagagtttagtagctatttacagtctagtataacagtgtcaattccagcagtgaaactctttcctaag |
32792149 |
T |
|
| Q |
303 |
atgcagtttactacattctcagcatcagatgaaattatcaagcttcagatacctctttctagagcagattgcacattgcagaccccatcgcacacctaaa |
402 |
Q |
| |
|
||| |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32792150 |
atgtagtttacttcattctcagcatcagatgcaattatcaagcttgagatacctctttctagagcagattgcacattgcagaccccatcgcacacctaaa |
32792249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 3 - 402
Target Start/End: Original strand, 24534026 - 24534425
Alignment:
| Q |
3 |
atcacaactgattagcagattgaagnnnnnnnnnnaggttcaaacatttaattcattgaagaaaagctggttcacagcttctaaaaagaggttacaacag |
102 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24534026 |
atcacaactgattagcagattgaagttttttttttaggttcaaacatttaattcgttgaagaaaagctggttcacagcttctaaaaagaggttacaacag |
24534125 |
T |
|
| Q |
103 |
tttcagttaccaaaagttcagtaggggcattccctatccaagctttaaatcctacagtcttagaaagaatggccatgtcacgtgcctctacattaaaaca |
202 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
24534126 |
tttcagttaccaacagttcagtaggggcattccctatccaagctttaaatcctacagtcttagaaagaatagccatgtcatgtgcctctacattaaaaca |
24534225 |
T |
|
| Q |
203 |
tcttttaacatggataattctagcaatagtaaaagagtttagcagctgcttacagtctagtataacagtgtcaattccagcactgaaactctttcctaag |
302 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24534226 |
tctttttacatggataattctagcaatagtaaaagagtttagtagctgtttacagtctagtataacagtgtcaattccagcagtgaaactctttcctaag |
24534325 |
T |
|
| Q |
303 |
atgcagtttactacattctcagcatcagatgaaattatcaagcttcagatacctctttctagagcagattgcacattgcagaccccatcgcacacctaaa |
402 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24534326 |
atgcagtttacttaattctcagcatcagatgcaattatcaagcttgagatacctctttctagagcaaattgcacattgcagaccccatcgcacacctaaa |
24534425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0513 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0513
Description:
Target: scaffold0513; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 298 - 375
Target Start/End: Complemental strand, 7682 - 7605
Alignment:
| Q |
298 |
ctaagatgcagtttactacattctcagcatcagatgaaattatcaagcttcagatacctctttctagagcagattgca |
375 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7682 |
ctaagatgcagattgctacattctcagcatcagatgcaataatcaagcttgagatacctctttctagagcagattgca |
7605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 328
Target Start/End: Original strand, 17720996 - 17721051
Alignment:
| Q |
273 |
tcaattccagcactgaaactctttcctaagatgcagtttactacattctcagcatc |
328 |
Q |
| |
|
||||| ||| || |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17720996 |
tcaatcccaacagtgaaactctttcctaagatgcagtttactacattctcaacatc |
17721051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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