View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5452_high_4 (Length: 251)

Name: NF5452_high_4
Description: NF5452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5452_high_4
NF5452_high_4
[»] chr2 (19 HSPs)
chr2 (1-233)||(39903942-39904165)
chr2 (1-88)||(12016727-12016814)
chr2 (1-88)||(16126589-16126676)
chr2 (1-88)||(19228486-19228573)
chr2 (1-87)||(27665075-27665161)
chr2 (1-89)||(22705515-22705603)
chr2 (1-88)||(13351241-13351328)
chr2 (1-88)||(16919184-16919271)
chr2 (1-87)||(4821337-4821423)
chr2 (3-88)||(2060072-2060158)
chr2 (3-73)||(10690845-10690915)
chr2 (1-87)||(14377485-14377571)
chr2 (3-88)||(8770916-8771001)
chr2 (3-88)||(26229884-26229969)
chr2 (9-87)||(16123347-16123425)
chr2 (23-88)||(9747400-9747465)
chr2 (1-88)||(15411652-15411740)
chr2 (32-85)||(35729209-35729262)
chr2 (31-87)||(41492164-41492220)
[»] chr8 (21 HSPs)
chr8 (1-88)||(10129164-10129251)
chr8 (1-88)||(7140489-7140576)
chr8 (1-87)||(9743922-9744008)
chr8 (1-88)||(9801729-9801816)
chr8 (22-87)||(45519593-45519658)
chr8 (1-88)||(13327971-13328058)
chr8 (1-88)||(18567446-18567533)
chr8 (1-88)||(8140628-8140715)
chr8 (1-88)||(39701833-39701920)
chr8 (1-88)||(40210851-40210938)
chr8 (14-87)||(38527898-38527971)
chr8 (1-81)||(19343873-19343954)
chr8 (8-88)||(26682135-26682216)
chr8 (36-88)||(31451420-31451472)
chr8 (23-88)||(31812196-31812261)
chr8 (23-87)||(39024888-39024952)
chr8 (12-87)||(1203673-1203748)
chr8 (1-87)||(35678306-35678392)
chr8 (9-48)||(45516356-45516395)
chr8 (23-88)||(26834644-26834709)
chr8 (8-88)||(44091385-44091466)
[»] chr7 (18 HSPs)
chr7 (1-88)||(384460-384547)
chr7 (1-88)||(3561908-3561995)
chr7 (1-88)||(39757140-39757227)
chr7 (1-87)||(5909313-5909399)
chr7 (1-87)||(19889401-19889487)
chr7 (1-88)||(9332022-9332109)
chr7 (1-84)||(47120228-47120311)
chr7 (1-87)||(12085962-12086048)
chr7 (1-88)||(18102260-18102348)
chr7 (12-88)||(8170593-8170669)
chr7 (1-88)||(36548490-36548577)
chr7 (3-88)||(23982785-23982871)
chr7 (23-87)||(7170085-7170149)
chr7 (23-87)||(41331487-41331551)
chr7 (1-44)||(24250374-24250417)
chr7 (9-80)||(47457499-47457571)
chr7 (44-87)||(24250602-24250645)
chr7 (40-88)||(8594998-8595045)
[»] chr1 (24 HSPs)
chr1 (1-88)||(313810-313897)
chr1 (1-88)||(6570015-6570102)
chr1 (1-88)||(30288894-30288981)
chr1 (1-88)||(44918085-44918172)
chr1 (1-88)||(8062265-8062352)
chr1 (1-87)||(17919514-17919600)
chr1 (1-87)||(39150358-39150444)
chr1 (9-86)||(32716195-32716272)
chr1 (12-87)||(39930832-39930907)
chr1 (33-88)||(10896446-10896501)
chr1 (9-87)||(52833503-52833581)
chr1 (36-88)||(44007560-44007612)
chr1 (23-80)||(3096292-3096349)
chr1 (23-88)||(30171962-30172027)
chr1 (23-88)||(30187503-30187568)
chr1 (23-87)||(6754554-6754618)
chr1 (23-87)||(41624912-41624976)
chr1 (1-80)||(30363033-30363113)
chr1 (3-46)||(43671752-43671795)
chr1 (23-88)||(21391929-21391994)
chr1 (1-88)||(21854147-21854235)
chr1 (32-88)||(24669019-24669075)
chr1 (1-88)||(31100963-31101051)
chr1 (32-88)||(52337858-52337914)
[»] chr5 (14 HSPs)
chr5 (3-88)||(30328357-30328442)
chr5 (1-88)||(4047473-4047560)
chr5 (1-88)||(9184268-9184355)
chr5 (1-88)||(2795584-2795671)
chr5 (1-88)||(41350263-41350350)
chr5 (14-88)||(14466524-14466598)
chr5 (1-88)||(31365980-31366067)
chr5 (1-88)||(34578072-34578159)
chr5 (9-88)||(15190941-15191021)
chr5 (1-87)||(28629939-28630025)
chr5 (1-83)||(11376020-11376103)
chr5 (1-88)||(12642023-12642110)
chr5 (23-87)||(8103611-8103675)
chr5 (1-88)||(24329665-24329753)
[»] chr6 (16 HSPs)
chr6 (1-88)||(22974603-22974690)
chr6 (1-88)||(23813711-23813798)
chr6 (1-86)||(5362925-5363010)
chr6 (1-88)||(31069612-31069699)
chr6 (1-88)||(2830711-2830798)
chr6 (1-88)||(31568170-31568257)
chr6 (23-88)||(10887112-10887177)
chr6 (1-88)||(1017808-1017896)
chr6 (1-50)||(34300422-34300472)
chr6 (23-88)||(18332718-18332783)
chr6 (23-80)||(31169801-31169858)
chr6 (1-38)||(32615540-32615577)
chr6 (23-87)||(17596424-17596488)
chr6 (32-88)||(31503834-31503890)
chr6 (1-43)||(3850612-3850654)
chr6 (1-88)||(8977496-8977584)
[»] chr3 (18 HSPs)
chr3 (1-88)||(3863390-3863477)
chr3 (1-88)||(16875055-16875142)
chr3 (1-87)||(50364251-50364337)
chr3 (1-87)||(11610975-11611061)
chr3 (1-87)||(29686381-29686467)
chr3 (1-87)||(13495354-13495441)
chr3 (9-87)||(20938125-20938204)
chr3 (3-80)||(54621256-54621333)
chr3 (1-50)||(51339252-51339301)
chr3 (4-87)||(40497110-40497194)
chr3 (1-88)||(32553427-32553514)
chr3 (23-88)||(36426439-36426504)
chr3 (23-88)||(38389530-38389595)
chr3 (24-88)||(23523030-23523094)
chr3 (12-88)||(24978718-24978794)
chr3 (41-87)||(41151734-41151780)
chr3 (132-212)||(53576925-53577007)
chr3 (32-88)||(49396472-49396528)
[»] scaffold0155 (1 HSPs)
scaffold0155 (3-88)||(3443-3528)
[»] scaffold0061 (1 HSPs)
scaffold0061 (1-88)||(52809-52896)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-88)||(145738-145825)
[»] chr4 (18 HSPs)
chr4 (1-88)||(48910832-48910919)
chr4 (1-83)||(41415592-41415674)
chr4 (1-88)||(4329655-4329742)
chr4 (1-88)||(35999977-36000057)
chr4 (1-88)||(23553631-23553718)
chr4 (1-88)||(29190846-29190933)
chr4 (1-88)||(53961383-53961470)
chr4 (1-87)||(7349749-7349835)
chr4 (1-76)||(10389310-10389385)
chr4 (10-87)||(23051413-23051490)
chr4 (23-88)||(54495667-54495732)
chr4 (1-88)||(16667414-16667502)
chr4 (23-88)||(27362474-27362539)
chr4 (23-88)||(47326922-47326987)
chr4 (23-88)||(47341718-47341783)
chr4 (40-88)||(49228754-49228802)
chr4 (1-83)||(10813529-10813612)
chr4 (1-88)||(49181132-49181220)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-88)||(13146-13233)
[»] scaffold0727 (1 HSPs)
scaffold0727 (1-88)||(5752-5839)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-80)||(43523-43602)
[»] scaffold0018 (1 HSPs)
scaffold0018 (9-88)||(182112-182190)
[»] scaffold0111 (1 HSPs)
scaffold0111 (23-88)||(37144-37209)
[»] scaffold0618 (1 HSPs)
scaffold0618 (8-88)||(8444-8525)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 39904165 - 39903942
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaaacttcttaacat 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||    
T  39904165 tgaaaatcaacaattattgattaaaagctacatgtttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa---------cat 39904075  T
Q  101 gatagaaaacccttatttatatttaagagcgttgctatttggtacgggttaaaaacaacgaaaaatgacgggaagaagaaacaagctgttacagattttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39904074 gatagaaaacccttatttatatttaagagcgttgctatttggtacgggttaaaaacaacgaaaaatgacgggaagaagaaacaagctgttacagattttt 39903975  T
Q  201 tatttaatattatagtaaattttgacttgtagt 233  Q
    |||||||||||||||||||||||||||||||||    
T  39903974 tatttaatattatagtaaattttgacttgtagt 39903942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 12016727 - 12016814
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  12016727 tgaaaaccaacaattattgattaaaagctacatatttaatataaaaaacacaagttccaagttaaaattactactttaaacttcttaa 12016814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 16126676 - 16126589
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||    
T  16126676 tgaaaaccaacaattattgattaaaagctacatatttaatataaaaaacacaagtttcaagttaaagttactactttaaacttcttaa 16126589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 19228486 - 19228573
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| |||||||||||||||||||| ||||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||    
T  19228486 tgaaaaccaacaattattgattaaaagttacatatttaatacaaaaaacacaagttccaagtcaaagttactactttaaacttcttaa 19228573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 27665161 - 27665075
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||||| ||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  27665161 tgaaaaccaacaattatttattaaaagttacatatttaatataaaaaacacaagttccaagtcaaagttactactttaaacttctta 27665075  T

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Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 22705515 - 22705603
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaaa 89  Q
    |||||| ||||||||||| ||| |||| |||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  22705515 tgaaaaccaacaattattaatttaaagttacatatttaatataaaaaacacaagtttcaagttaaaattactactttaaacttcttaaa 22705603  T

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Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 13351328 - 13351241
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||||| |||||||| |||||||| ||||||||||||| |||||| |||| ||| |||||||||||||||||||||    
T  13351328 tgaaaatcaacaattattaattaaaagttacatattaaatataaaaaacacaagttctaagtcaaagttactactttaaacttcttaa 13351241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 16919271 - 16919184
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| ||| |||||||||||||||| ||||    
T  16919271 tgaaaaccaacaattattgattaaaagttacatatttaatataaaaaacacaagtttcaagtcaaagttactactttaaacttgttaa 16919184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 4821337 - 4821423
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| | ||| ||||||||||||||||||||    
T  4821337 tgaaaaccaacaattatttattaaaagctacatatttaatataaaaaacacaagtttcaaatcaaagttactactttaaacttctta 4821423  T

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Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 2060158 - 2060072
Alignment:
Q  3 aaaatcaacaattattgattaaa-agctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||| |||||| ||||||||||||||||||||| ||| || |||||||||||| ||||||||||||| |||||||    
T  2060158 aaaatcaacaattatttattaaagagctacatatttaatataaaagacacaaattccaagttaaagttactactttaaatttcttaa 2060072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 10690845 - 10690915
Alignment:
Q  3 aaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttacta 73  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||    
T  10690845 aaaaccaacaattattgattaaaagctacatatttaatataaaaaacataagtttcaaattaaaattacta 10690915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 14377485 - 14377571
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||||| |||||||||||  ||||||| |||||||||||||||||||||| ||||| ||||| ||| ||||||||||||||||||||    
T  14377485 tgaaaaccaacaattatttgttaaaagttacatatttaatataaaaaacacaagtttcaagtcaaagttactactttaaacttctta 14377571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 8771001 - 8770916
Alignment:
Q  3 aaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||||| || || ||||| ||| |||||||||||||||||||||    
T  8771001 aaaaccaacaattatttattaaaagttacatatttaatataaaaaacaaaaatttcaagtcaaaattactactttaaacttcttaa 8770916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 26229969 - 26229884
Alignment:
Q  3 aaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||| |||||||||||||||||||| |||||||||||||||||||| |||| ||  |||| ||| |||||| ||||||||||||||    
T  26229969 aaaaccaacaattattgattaaaagttacatatttaatataaaaaatataaattttaagtcaaagttactattttaaacttcttaa 26229884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 16123347 - 16123425
Alignment:
Q  9 aacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    ||||||| ||||||||| | |||||||||||||||||||||| ||||||| | | ||| |||||| |||||||||||||    
T  16123347 aacaattgttgattaaatgttacatatttaatataaaaaacacaagttcctaatcaaaattactaatttaaacttctta 16123425  T

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Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 9747400 - 9747465
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||||||||||||||||||   | ||||||||||  ||| |||||| ||||||||||||||    
T  9747400 aaaagctacatatttaatataaaatgaacaagttccaagacaaaattactattttaaacttcttaa 9747465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 15411740 - 15411652
Alignment:
Q  1 tgaaaatcaacaattattgattaaaa-gctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||||||| ||| ||||||| ||||||||||||||||||||   | ||||| ||||  ||| |||||| ||||||||||||||    
T  15411740 tgaaaaacaacaataatttattaaaaagctacatatttaatataaaatgaacaagtttcaagacaaagttactattttaaacttcttaa 15411652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 35729209 - 35729262
Alignment:
Q  32 atatttaatataaaaaacataagttccaagttaaatttactactttaaacttct 85  Q
    ||||||| ||||||| ||| |||||||||  ||||||| |||||||||||||||    
T  35729209 atatttactataaaatacacaagttccaatataaatttgctactttaaacttct 35729262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 41492220 - 41492164
Alignment:
Q  31 catatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    ||||||||||| ||||  || ||||| ||||||||| ||| ||||||||||||||||    
T  41492220 catatttaataaaaaatgcacaagtttcaagttaaagttattactttaaacttctta 41492164  T

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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 10129164 - 10129251
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  10129164 tgaaaaccaacaattattgattaaaagctacatatttaatataaaaaacacaagttccaagttaaaattactactttaaacttcttaa 10129251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 7140576 - 7140489
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  7140576 tgaaaaccaacaattattgattaaaaactacatatttaatataaaaaacacaagttccaagttaaaattactactttaaacttcttaa 7140489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 9743922 - 9744008
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  9743922 tgaaaaccaacaattatttattaaaagttacatatttaatataaaaaacataagttccaagtcaaagttactactttaaacttctta 9744008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 9801729 - 9801816
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||||||||||||||||||||| || ||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||||||    
T  9801729 tgaaaatcaacaattattgattaaaagttatatatttaatataacaaacataagtttcaagtcaaagttactactttaaacttcttaa 9801816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 45519658 - 45519593
Alignment:
Q  22 taaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  45519658 taaaagctacatatttaatataaaaaacacaagttccaagttaaagttactactttaaacttctta 45519593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 13328058 - 13327971
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| |||||||||||||||||| | |||||||||||||||||||||| ||||| ||||| ||| |||||| ||||||||||||||    
T  13328058 tgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacacaagtttcaagtcaaagttactaatttaaacttcttaa 13327971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 18567533 - 18567446
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| |||||||||||||||||| | |||||||||||||||||||||| | ||||||||| ||| |||||| ||||||||||||||    
T  18567533 tgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacacatgttccaagtcaaagttactaatttaaacttcttaa 18567446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 8140628 - 8140715
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||  |||| ||| ||| |||||||| ||||||||    
T  8140628 tgaaaaccaacaattatttattaaaagctacatatttaatataaaaaacataaattttaagtcaaaattattactttaatcttcttaa 8140715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 39701920 - 39701833
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||||||||| | |||||||| |||||||||||||||||||||| || || ||||| ||| |||||||||||||||| ||||    
T  39701920 tgaaaaccaacaattactaattaaaagttacatatttaatataaaaaacacaaatttcaagtcaaagttactactttaaacttgttaa 39701833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 40210938 - 40210851
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| |||||||||||||||||| | |||||||||||||||||||||| || ||| |||| ||| |||||| ||||||| ||||||    
T  40210938 tgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacacaaattcaaagtcaaagttactaatttaaacgtcttaa 40210851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 38527898 - 38527971
Alignment:
Q  14 ttattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    ||||| ||||||||||||||||||||||||||||||| || |||||| | ||| ||| ||||||||||||||||    
T  38527898 ttatttattaaaagctacatatttaatataaaaaacacaaattccaaatcaaaattattactttaaacttctta 38527971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 19343954 - 19343873
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaata-taaaaaacataagttccaagttaaatttactactttaaac 81  Q
    |||||| ||||||||||||| |||||| ||||||||||||| ||||||| | ||||| ||||| ||| ||||||||||||||    
T  19343954 tgaaaaccaacaattattgagtaaaagttacatatttaatattaaaaaatacaagtttcaagtcaaaattactactttaaac 19343873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 26682135 - 26682216
Alignment:
Q  8 caacaattattgattaaaa-gctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||||| ||||||| |||||| |||||||||||||  || ||||||||||| ||| ||||||||||||| |||||||    
T  26682135 caacaattatttattaaaaagctacacatttaatataaaatgcacaagttccaagtcaaagttactactttaaatttcttaa 26682216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 31451420 - 31451472
Alignment:
Q  36 ttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||||||||| ||||| ||||||||| |||||||||||||||||||||    
T  31451420 ttaatataaaaaacacaagtttcaagttaaagttactactttaaacttcttaa 31451472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 31812196 - 31812261
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||||||| |||  || ||||||||||| ||| |||| | ||||||||||||||    
T  31812196 aaaagctacatatttaatatgaaatgcacaagttccaagtcaaaattaccattttaaacttcttaa 31812261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 39024952 - 39024888
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||| ||||||| |||||||||||  || || |||||||| ||| ||||||||||||||||||||    
T  39024952 aaaatctacatagttaatataaaatgcacaaattccaagtcaaagttactactttaaacttctta 39024888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 1203673 - 1203748
Alignment:
Q  12 aattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    ||||||| |||||  | |||||||||||||||||||||| |||||   | | ||| ||||||||||||||||||||    
T  1203673 aattattaattaactgttacatatttaatataaaaaacacaagtttttaatcaaaattactactttaaacttctta 1203748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 35678392 - 35678306
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagct-acatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||||| ||||||||| | |||||||  | |||||||||||||||| | || ||||| ||||| ||| ||||||||||||||||||||    
T  35678392 tgaaaaccaacaattaattattaaaaatttacatatttaatataaata-cacaagtttcaagtcaaagttactactttaaacttctta 35678306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 45516356 - 45516395
Alignment:
Q  9 aacaattattgattaaaagctacatatttaatataaaaaa 48  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  45516356 aacaattatttattaaaagctacatatttaatatataaaa 45516395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 26834644 - 26834709
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||||||| |||  || ||||||||||| ||| |||| | |||||| |||||||    
T  26834644 aaaagctacatatttaatatgaaatgcacaagttccaagtcaaaattaccattttaaatttcttaa 26834709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 44091385 - 44091466
Alignment:
Q  8 caacaattattgattaaaag-ctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||||| |||||||  ||||| |||||||||||||  || |||||| || | ||| ||||||||||||| |||||||    
T  44091385 caacaattatttattaaaaaactacaaatttaatataaaatgcacaagttctaaatcaaagttactactttaaatttcttaa 44091466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 384547 - 384460
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||    
T  384547 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaaaacaagttccaagttaaagttactactttaaacttcttaa 384460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 3561995 - 3561908
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||  |||||||| |||||||||||||||||||||    
T  3561995 tgaaaatcaataattattgattaaaagctacatatttaatataaaaaacacaagttttaagttaaagttactactttaaacttcttaa 3561908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 39757227 - 39757140
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| |||||| ||||||||||||||    
T  39757227 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacacaaatttcaagttaaagttactattttaaacttcttaa 39757140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 5909399 - 5909313
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||||||||||||||||||    
T  5909399 tgaaaaccaacaattatttattaaaagctacatatttaatataaaaaacacaagtttcaagtcaaagttactactttaaacttctta 5909313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 19889401 - 19889487
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||||| ||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  19889401 tgaaaaccaacaattatttattaaaagttacatatttaatataaaaaacacaagttccaagtcaaagttactactttaaacttctta 19889487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 9332022 - 9332109
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||| ||||| ||||| ||| |||||| ||||||||||||||    
T  9332022 tgaaaatcaacaattattgattaaatgttacatatttaatataaaaaacacaagtttcaagtcaaagttactaatttaaacttcttaa 9332109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 47120311 - 47120228
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttc 84  Q
    |||||| |||||||||||||||||| | |||||||||||||||||||||| ||||||||||| ||| |||||| ||||||||||    
T  47120311 tgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacacaagttccaagtcaaagttactaatttaaacttc 47120228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 12086048 - 12085962
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||||||||||||||||| |||||||| || ||||||||||||||||||| ||||| ||||| ||| |||||  |||||||||||||    
T  12086048 tgaaaatcaacaattatttattaaaagttaaatatttaatataaaaaacacaagtttcaagtcaaaattacttatttaaacttctta 12085962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 18102348 - 18102260
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataa-aaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||||||||||||||||||| | |||||||||||||||| |||||| ||||| ||||| ||| ||| || ||||||||||||||    
T  18102348 tgaaaatcaacaattattgattaaatgttacatatttaatataaaaaaacacaagtttcaagtcaaagttattaatttaaacttcttaa 18102260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 8170593 - 8170669
Alignment:
Q  12 aattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||| || ||||||||||||||||| | |||||  |||||||| |||||||||||||||| ||||    
T  8170593 aattattgattaaaagttatatatttaatataaaaaataaaagttttaagttaaagttactactttaaactttttaa 8170669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 36548577 - 36548490
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||||||||||||||||||   |||||||||||||||||||| | || ||  |||| ||| |||||| ||||||||||||||    
T  36548577 tgaaaaccaacaattattgattaaatattacatatttaatataaaaaatacaaattttaagtcaaagttactaatttaaacttcttaa 36548490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 23982871 - 23982785
Alignment:
Q  3 aaaatcaacaattattgattaaaagct-acatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||| ||||||||| | ||||||| || | ||||||||||||||| ||| ||||||||||| ||| ||||||||||||| |||||||    
T  23982871 aaaaccaacaattaattattaaaaacttaaatatttaatataaaatacacaagttccaagtcaaagttactactttaaatttcttaa 23982785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 7170085 - 7170149
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||| ||||||| |||||||||||  || ||||||||||| ||| ||||||||||||||||||||    
T  7170085 aaaatctacataattaatataaaatgcacaagttccaagtcaaagttactactttaaacttctta 7170149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 41331551 - 41331487
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||| |||||||||||||||||||  || ||||||||||| ||| ||||||||||||| ||||||    
T  41331551 aaaacctacatatttaatataaaatgcacaagttccaagtcaaagttactactttaaatttctta 41331487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 24250374 - 24250417
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataa 44  Q
    |||||| ||||||||||| |||||||||||||||||||||||||    
T  24250374 tgaaaaccaacaattatttattaaaagctacatatttaatataa 24250417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 47457571 - 47457499
Alignment:
Q  9 aacaattattgatt-aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaa 80  Q
    |||||||||| ||| |||||||||| || ||||||||||  ||||| |||||||| ||| |||||||||||||    
T  47457571 aacaattatttatttaaaagctacacatataatataaaatgcataaattccaagtcaaagttactactttaaa 47457499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 24250602 - 24250645
Alignment:
Q  44 aaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||||    
T  24250602 aaaaacacaagttccaagtcaaagttactactttaaacttctta 24250645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 8594998 - 8595045
Alignment:
Q  40 tataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||||| ||||||||||||||| | |||| ||||||||||||||    
T  8594998 tataaaaaacacaagttccaagttaaagtcacta-tttaaacttcttaa 8595045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 313810 - 313897
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  313810 tgaaaaccaacaattattgattaaaagctacatatttaatataaaaaacacaagttccaagttaaagttactactttaaacttcttaa 313897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 6570102 - 6570015
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  6570102 tgaaaaccaacaattattgattaaaagctacatatttaatataaaaaacacaagttccaagttaaagttactactttaaacttcttaa 6570015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 30288981 - 30288894
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  30288981 tgaaaaccaacaattattgattaaaagctacatatttaatataaaaaacacaagttccaagttaaaattactactttaaacttcttaa 30288894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 44918085 - 44918172
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||    
T  44918085 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaaattaaagttactactttaaatttcttaa 44918172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 8062265 - 8062352
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||| ||||| |||||||||||||||| ||||    
T  8062265 tgaaaatcaacaattattgattaaaaactatatatttaatataaaaaacataaatttcaaattaaagttactactttaaactttttaa 8062352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 17919514 - 17919600
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||||| ||||||||||| |||||||| |||||||||||||||||||||| || |||||||| ||| ||||||||||||||||||||    
T  17919514 tgaaaaccaacaattatttattaaaagttacatatttaatataaaaaacacaaattccaagtcaaagttactactttaaacttctta 17919600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 39150444 - 39150358
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||||| ||||||||||| |||||||| |||||||||||||||||||||| || |||||||| ||| ||||||||||||||||||||    
T  39150444 tgaaaaccaacaattatttattaaaagttacatatttaatataaaaaacacaaattccaagtcaaagttactactttaaacttctta 39150358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 32716272 - 32716195
Alignment:
Q  9 aacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctt 86  Q
    ||||||||||||||||| | |||||||||||||||||||||| ||||||| | | ||| |||||||||||||||||||    
T  32716272 aacaattattgattaaatgttacatatttaatataaaaaacacaagttcctaatcaaaattactactttaaacttctt 32716195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 39930907 - 39930832
Alignment:
Q  12 aattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    ||||||| ||||||| |||||||| |||||||||||| | ||||| ||||||||| ||||||||||||||||||||    
T  39930907 aattatttattaaaaactacatatataatataaaaaatacaagtttcaagttaaagttactactttaaacttctta 39930832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 10896446 - 10896501
Alignment:
Q  33 tatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||||| |||||| |||||||| |||||||||||||||||||||    
T  10896446 tatttaatataaaaaacacaagttcaaagttaaagttactactttaaacttcttaa 10896501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 52833581 - 52833503
Alignment:
Q  9 aacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||||||||| ||||||||||||||||||| |||||||| || || || ||||| ||| |||||| |||||||||||||    
T  52833581 aacaattatttattaaaagctacatatttattataaaaatcacaaatttcaagtcaaaattactattttaaacttctta 52833503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 44007612 - 44007560
Alignment:
Q  36 ttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||||||||| ||||||||||||||| || ||||||||||||||||||    
T  44007612 ttaatataaaaaacacaagttccaagttaaagttgctactttaaacttcttaa 44007560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 3096292 - 3096349
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaa 80  Q
    |||| |||||||||||||||||||||||||||||  |||||||| ||| |||||||||    
T  3096292 aaaatctacatatttaatataaaaaacataagttttaagttaaaattattactttaaa 3096349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 30171962 - 30172027
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||||||| |||  || ||||||||||| ||| |||| ||||||||||||||||    
T  30171962 aaaagctacatatttaatatgaaatgcacaagttccaagtcaaagttaccactttaaacttcttaa 30172027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 30187503 - 30187568
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||||||| |||  || ||||||||||| ||| |||| ||||||||||||||||    
T  30187503 aaaagctacatatttaatatgaaatgcacaagttccaagtcaaagttaccactttaaacttcttaa 30187568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 6754554 - 6754618
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||| ||||||| |||||||||||  || ||||||||||| ||| ||||||||||||||||||||    
T  6754554 aaaatctacataattaatataaaatgcacaagttccaagtcaaagttactactttaaacttctta 6754618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 41624912 - 41624976
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||| ||||||| |||||||||||  || ||||||||||| ||| ||||||||||||||||||||    
T  41624912 aaaatctacataattaatataaaatgcacaagttccaagtcaaagttactactttaaacttctta 41624976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 30363113 - 30363033
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagc-tacatatttaatataaaaaacataagttccaagttaaatttactactttaaa 80  Q
    |||||| ||||||||| | ||||||| | ||||||||||||||||||  || ||||||||||| ||| |||||| ||||||    
T  30363113 tgaaaaccaacaattaattattaaaaacctacatatttaatataaaatgcacaagttccaagtcaaagttactattttaaa 30363033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 43671752 - 43671795
Alignment:
Q  3 aaaatcaacaattattgattaaaagctacatatttaatataaaa 46  Q
    |||||||||||||||| |||||||| || |||||||||||||||    
T  43671752 aaaatcaacaattatttattaaaagttatatatttaatataaaa 43671795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 21391994 - 21391929
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||| ||| |||||| |||||||| ||| |||||| |||  ||| |||||||||||||||||||||    
T  21391994 aaaaactaaatattttatataaaatacacaagttctaagccaaagttactactttaaacttcttaa 21391929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 21854235 - 21854147
Alignment:
Q  1 tgaaaatcaacaattattgatt-aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||||| ||||| ||| ||||| ||| ||||||||||||||   | ||||||||||| ||| |||| ||||||||||| ||||    
T  21854235 tgaaaaacaacatttatttatttaaaagatacctatttaatataaaatgtacaagttccaagtcaaagttaccactttaaactttttaa 21854147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 24669019 - 24669075
Alignment:
Q  32 atatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||  ||||||||  ||  ||||||||||| ||||||||||||||    
T  24669019 atatttaatataaaatgcataagttataatataaatttactattttaaacttcttaa 24669075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 31101051 - 31100963
Alignment:
Q  1 tgaaaatcaacaattattgattaaaa-gctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||||| ||||| ||||||| || |||||||||||||||||  || |||||  |||| ||| |||| |||||||| |||||||    
T  31101051 tgaaaaacaacacttatttattaaaaagcaacatatttaatataaaatgcacaagttttaagtcaaagttaccactttaaatttcttaa 31100963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 52337858 - 52337914
Alignment:
Q  32 atatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||||||||| ||||||||| |||   | |||||||| ||||||||||||||    
T  52337858 atatttaatataaaatacataagttgcaatgcatatttactattttaaacttcttaa 52337914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 30328442 - 30328357
Alignment:
Q  3 aaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  30328442 aaaaccaacaattattgattaaaagctacatatttaatataaaaaacacaagttccaagttaaagttactactttaaacttcttaa 30328357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 4047473 - 4047560
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  4047473 tgaaaaccaacaattgttgattaaaagctacatatttaatataaaaaacacaagttccaagttaaagttactactttaaacttcttaa 4047560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 9184268 - 9184355
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  9184268 tgaaaaccaataattattgattaaaaactacatatttaatataaaaaacacaagttccaagttaaagttactactttaaacttcttaa 9184355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 2795584 - 2795671
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| |||||||||||||||||||| ||||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||    
T  2795584 tgaaaaccaacaattattgattaaaagttacatatttaatacaaaaaacacaagttccaagtcaaagttactactttaaacttcttaa 2795671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 41350263 - 41350350
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||| || ||||||||||| ||| |||||||||||||||||||||    
T  41350263 tgaaaatcaacaattatttattaaaagttacatatttaatataaaaagcacaagttccaagtcaaaattactactttaaacttcttaa 41350350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 14466598 - 14466524
Alignment:
Q  14 ttattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||    
T  14466598 ttattgattaaaagctacatatttaatataaaaaacacaagtttcaagttaaagttactactttaaacttcttaa 14466524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 31366067 - 31365980
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| |||||||||||||||||| | |||||||||||||||||||||| ||||||||||| ||| |||||| ||||||||||||||    
T  31366067 tgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacacaagttccaagtcaaagttactaatttaaacttcttaa 31365980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 34578072 - 34578159
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| | |||||  |||||||| |||||| ||||||||| ||||    
T  34578072 tgaaaatcaacaattgttgattaaaagctacatatttaatataaaaaatacaagttttaagttaaagttactattttaaactttttaa 34578159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 15190941 - 15191021
Alignment:
Q  9 aacaattattgattaaaagctacatatttaatat-aaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||| ||| |||||||||||||||||||||    
T  15190941 aacaattattgattaaaagttacatatttaatataaaaaaacacaagtttcaagtcaaaattactactttaaacttcttaa 15191021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 28629939 - 28630025
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||||| ||||||||||| |||||||| |||||||||||||||||||||| ||||  |||||||||  || ||||||||||||||||    
T  28629939 tgaaaaccaacaattatttattaaaagttacatatttaatataaaaaacacaagtctcaagttaaagatattactttaaacttctta 28630025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 11376020 - 11376103
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaaca-taagttccaagttaaatttactactttaaactt 83  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||  || || ||||| ||| ||||||||||||||||    
T  11376020 tgaaaatcaataattatttattaaaagctacatatttaatataaaaaacacaaaatttcaagtcaaagttactactttaaactt 11376103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 12642110 - 12642023
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| |||||||||| | ||||| | |||||||||||||||||||||| ||||||||| | ||| ||| || ||||||||||||||    
T  12642110 tgaaaaccaacaattatcgtttaaatgttacatatttaatataaaaaacacaagttccaaatcaaagttattaatttaaacttcttaa 12642023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 8103675 - 8103611
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||| ||||||| |||||||||||  || ||||||||||| ||| ||||||||||||||||||||    
T  8103675 aaaatctacataattaatataaaatgcacaagttccaagtcaaagttactactttaaacttctta 8103611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 24329753 - 24329665
Alignment:
Q  1 tgaaaatcaacaattattgatt-aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||||| ||||| ||| ||||| ||| ||||||||||||||   | ||||||||||| ||| |||| ||||||||||| ||||    
T  24329753 tgaaaaacaacatttatttatttaaaagatacctatttaatataaaatgtacaagttccaagtcaaagttaccactttaaactttttaa 24329665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 22974690 - 22974603
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||    
T  22974690 tgaaaatcaacaattattgattaaaagttacatatttaatataaaaaacacaagttccaagttaaagttactattttaaacttcttaa 22974603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 23813711 - 23813798
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||    
T  23813711 tgaaaatcaacaattattgattaaaagttacatatttaatataaaaaacacaagttccaagttaaagttactattttaaacttcttaa 23813798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 5363010 - 5362925
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctt 86  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  5363010 tgaaaaccaacaattgttgattaaaagctacatatttaatataaaaaacacaagttccaagttaaagttactactttaaacttctt 5362925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 31069699 - 31069612
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| |||||||||||||||||| | |||||||||||||||||||||| ||||||||||| ||| |||||| ||||||||||||||    
T  31069699 tgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacacaagttccaagtcaaagttactaatttaaacttcttaa 31069612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 2830798 - 2830711
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| || ||||| ||| || ||||||||||||||    
T  2830798 tgaaaaccaacaattattgattaaaagctacatatttaatataaaaaacacaaattctaaattaaagttattattttaaacttcttaa 2830711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 31568170 - 31568257
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||||||||| ||  | |||||||||||||||| ||||||||||| ||||| ||| | ||| |||||||||||||||| ||||    
T  31568170 tgaaaatcaacaatttttattcaaaagctacatatttattataaaaaacacaagtttcaaatcaaagttactactttaaactttttaa 31568257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 10887112 - 10887177
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||||||||||| ||| ||||||||| | ||| |||| ||||||||||||||||    
T  10887112 aaaagctacatatttaatataaaatacacaagttccaaatcaaaattaccactttaaacttcttaa 10887177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 1017896 - 1017808
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagct-acatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||||||||||| |||||||  | |||||||||||||||||  || || || ||||| ||| |||||||||||||||||||||    
T  1017896 tgaaaaccaacaattatttattaaaaatttacatatttaatataaaatgcacaactttcaagtcaaagttactactttaaacttcttaa 1017808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 34300422 - 34300472
Alignment:
Q  1 tgaaaatcaacaattattgatt-aaaagctacatatttaatataaaaaaca 50  Q
    |||||||||| ||||||| ||| ||||||||||||||||||||||||||||    
T  34300422 tgaaaatcaataattatttatttaaaagctacatatttaatataaaaaaca 34300472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 18332783 - 18332718
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||| ||||||||||| |||  |||||||||||||| ||| |||  ||||||||||||||||    
T  18332783 aaaagctatatatttaatatgaaatgcataagttccaagtcaaaattatcactttaaacttcttaa 18332718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 31169858 - 31169801
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaa 80  Q
    |||| |||||||||||||||||||  || ||||||||||| ||| |||||||||||||    
T  31169858 aaaacctacatatttaatataaaatgcacaagttccaagtcaaagttactactttaaa 31169801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32615577 - 32615540
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatattta 38  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  32615577 tgaaaatcatcaattattgattaaaagctacatattta 32615540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 17596424 - 17596488
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||| ||||||| |||||||||||  || ||||||||| | ||| ||||||||||||||||||||    
T  17596424 aaaatctacatagttaatataaaatgcacaagttccaaatcaaagttactactttaaacttctta 17596488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 31503834 - 31503890
Alignment:
Q  32 atatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||||||||| ||| |||||||||  |||| ||||||||||||| |||||||    
T  31503834 atatttaatataaaatacacaagttccaatataaacttactactttaaatttcttaa 31503890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3850612 - 3850654
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatata 43  Q
    |||||||||| ||||||| |||||||| |||||||||||||||    
T  3850612 tgaaaatcaataattattcattaaaagttacatatttaatata 3850654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 8977584 - 8977496
Alignment:
Q  1 tgaaaatcaacaattattgatt-aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||||||| ||| ||| ||||| ||||||||||||||||||  || ||||| |||   |||||||||| ||| ||||||||||    
T  8977584 tgaaaaacaacaatcatttattgaaaagttacatatttaatataaaatgcacaagttacaatacaaatttactattttgaacttcttaa 8977496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 3863390 - 3863477
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||    
T  3863390 tgaaaatcagcaattattgattaaaagctacatatttaatataaaaaacacaagttccaagctaaagttactactttaaacttcttaa 3863477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 16875142 - 16875055
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||    
T  16875142 tgaaaaccaacaattgttgattaaaagctacatatttaatataaaaaacacaagtttcaagttaaagttactactttaaacttcttaa 16875055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 50364251 - 50364337
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  50364251 tgaaaaccaacaattattgattaaaagttacatatttaatataaaaaacacaagttccaagtcaaagttactactttaaacttctta 50364337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 11610975 - 11611061
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||||| ||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  11610975 tgaaaaccaacaattatttattaaaagttacatatttaatataaaaaacacaagttccaagtcaaagttactactttaaacttctta 11611061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 29686381 - 29686467
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||| ||||||||||||| ||||||||||| |||| |||||||||||||| |||||| |||||||| ||||||||||||||||||||    
T  29686381 tgaatatcaacaattatttattaaaagctatatatgtaatataaaaaacacaagttctaagttaaagttactactttaaacttctta 29686467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 13495354 - 13495441
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagc-tacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||||||||||||||||| ||||||| | ||||||||||||||||||  || ||||||||||| ||| ||||||||||||||||||||    
T  13495354 tgaaaatcaacaattatttattaaaaacctacatatttaatataaaatgcacaagttccaagtcaaaattactactttaaacttctta 13495441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 20938125 - 20938204
Alignment:
Q  9 aacaattattgattaaaagctacatatttaatataaaaaa-cataagttccaagttaaatttactactttaaacttctta 87  Q
    ||||||||||||||||||  |||||||||||||||||||| || ||||||||||| ||| ||||||||||||||||||||    
T  20938125 aacaattattgattaaaaattacatatttaatataaaaaaacacaagttccaagtcaaagttactactttaaacttctta 20938204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 54621333 - 54621256
Alignment:
Q  3 aaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaa 80  Q
    |||| |||||||||||||||||| | |||||||||||||||||||||| || |||||||| ||| |||||| ||||||    
T  54621333 aaaaccaacaattattgattaaatgttacatatttaatataaaaaacacaacttccaagtcaaagttactaatttaaa 54621256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 51339301 - 51339252
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaaca 50  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  51339301 tgaaaaccaacaattattgattaaaagctacgtatttaatataaaaaaca 51339252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 40497110 - 40497194
Alignment:
Q  4 aaatcaacaattattgattaaaag-ctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    ||||||||||||| | |||||||  ||||||| |||||||||||  || |||||| |||||||| ||||||||||||||||||||    
T  40497110 aaatcaacaattaattattaaaaatctacatagttaatataaaatgcacaagttctaagttaaagttactactttaaacttctta 40497194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 32553427 - 32553514
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||| |||||||  |||||   |||||||||||||||||||||| ||||| ||| ||||| ||| || ||||||||||||||    
T  32553427 tgaaaatcaataattattagttaaatattacatatttaatataaaaaacacaagtttcaaattaaagttattaatttaaacttcttaa 32553514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 36426504 - 36426439
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||||||| |||  || ||||||||||| ||| |||| ||||||||||||||||    
T  36426504 aaaagctacatatttaatatgaaatgcacaagttccaagtcaaaattaccactttaaacttcttaa 36426439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 38389530 - 38389595
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||||||| |||  || ||||||||||| ||| |||| ||||||||||||||||    
T  38389530 aaaagctacatatttaatatgaaatgcacaagttccaagtcaaaattaccactttaaacttcttaa 38389595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 23523030 - 23523094
Alignment:
Q  24 aaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||||||||||||| |||  || ||||||||||| ||| |||| ||||||||||||||||    
T  23523030 aaagctacatatttaatatgaaatgcacaagttccaagtcaaaattaccactttaaacttcttaa 23523094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 24978718 - 24978794
Alignment:
Q  12 aattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||  |||||||| ||| ||||||||| ||||| ||||| ||  | |||||||||||||| ||||    
T  24978718 aattattgattaaaaattacatattaaatttaaaaaacacaagtttcaagtcaacgtaactactttaaacttgttaa 24978794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 41151734 - 41151780
Alignment:
Q  41 ataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||||||| | |||||||||||| || ||||||||||||||||||||    
T  41151734 ataaaaaatacaagttccaagttcaaattactactttaaacttctta 41151780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 53577007 - 53576925
Alignment:
Q  132 ttgctatttggtacgggttaaaaacaacgaaaaatgacggga-agaagaaacaagctgttacaga-ttttttatttaatatta 212  Q
    |||||||||||||||||  |||||| ||||||||  |||||| | ||||||||||| | || ||| |||||||||||||||||    
T  53577007 ttgctatttggtacgggagaaaaactacgaaaaactacgggagaaaagaaacaagccgctagagatttttttatttaatatta 53576925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 49396472 - 49396528
Alignment:
Q  32 atatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||  ||||| ||  || | |||||||||||||||||||||||||    
T  49396472 atatttaatataaaatgcataaattttaattcaaatttactactttaaacttcttaa 49396528  T

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Target: scaffold0155 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 3528 - 3443
Alignment:
Q  3 aaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||    
T  3528 aaaaccaacaattattgattaaaagttacatatttaatataaaaaacataagttccaatttaaagtaactactttaaacttcttaa 3443  T

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Target: scaffold0061 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 52896 - 52809
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| |||||||||||||||||||| ||||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||    
T  52896 tgaaaaccaacaattattgattaaaagttacatatttaatacaaaaaacacaagttccaagtcaaagttactactttaaacttcttaa 52809  T

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Target: scaffold0017 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 145738 - 145825
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| |||||||||||||||||||| ||||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||    
T  145738 tgaaaaccaacaattattgattaaaagttacatatttaatacaaaaaacacaagttccaagtcaaagttactactttaaacttcttaa 145825  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 48910919 - 48910832
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||| || |||| ||||||| |||||||||||||||||||||    
T  48910919 tgaaaattaacaattattgattaaaagctacatatttaacataaaaaacacaaattcctagttaaagttactactttaaacttcttaa 48910832  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 41415674 - 41415592
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaactt 83  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| || || ||||| ||| ||||||||||||||||    
T  41415674 tgaaaatcaacaattatttattaaaagctacatatttaatataaaaaacacaaatttcaagtcaaagttactactttaaactt 41415592  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 4329655 - 4329742
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| |||| ||||||||||||||| ||||||||||||||||||||||||| || ||||| ||| |||||||||||||||| ||||    
T  4329655 tgaaaaccaacgattattgattaaaagttacatatttaatataaaaaacataaatttcaagtcaaagttactactttaaactttttaa 4329742  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 36000057 - 35999977
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||| |||||||||||||||||||||    
T  36000057 tgaaaaccaacaattattgattaaaagctacatatttaatataaaaaaca-------caagttaaagttactactttaaacttcttaa 35999977  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 23553631 - 23553718
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||| | || ||  |||||||| |||||||||||||||| ||||    
T  23553631 tgaaaaccaacaattattgattaaaaactacatatttaatataaaaaatacaaattttaagttaaagttactactttaaactttttaa 23553718  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 29190933 - 29190846
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| |||||||||||||||||| | | |||||||||||| ||||||| ||||||||||| ||| |||||| ||||||||||||||    
T  29190933 tgaaaaccaacaattattgattaaatgttgcatatttaatattaaaaacacaagttccaagtcaaagttactaatttaaacttcttaa 29190846  T

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Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 53961383 - 53961470
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||||||||||||| ||||| | |||||||||||||||||||||| || || ||||| ||| |||||| ||||||||||||||    
T  53961383 tgaaaatcaacaattattgtttaaatgttacatatttaatataaaaaacacaaatttcaagtcaaaattactaatttaaacttcttaa 53961470  T

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Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 7349749 - 7349835
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    |||||| |||||||||||  ||||||| |||||||||||||||||||||| |||||  |||| ||| ||||||||||||||||||||    
T  7349749 tgaaaaccaacaattatttgttaaaagttacatatttaatataaaaaacacaagttttaagtcaaagttactactttaaacttctta 7349835  T

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Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 10389385 - 10389310
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactt 76  Q
    |||||| |||||||||||||||||||| ||||||||| |||||||||||| |||||| |||| ||| |||||||||    
T  10389385 tgaaaaccaacaattattgattaaaagttacatatttcatataaaaaacacaagttctaagtcaaaattactactt 10389310  T

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Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 23051490 - 23051413
Alignment:
Q  10 acaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttctta 87  Q
    ||||||||| |||||||| ||||||||| |||||||||||| ||||| ||||| ||| ||||||||||||| ||||||    
T  23051490 acaattatttattaaaagttacatattttatataaaaaacacaagtttcaagtcaaagttactactttaaatttctta 23051413  T

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Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 54495732 - 54495667
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||||||| |||  || ||||||||||||||| |||| ||||||||||||||||    
T  54495732 aaaagctacatatttaatatgaaatgcacaagttccaagttaaagttaccactttaaacttcttaa 54495667  T

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Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 16667502 - 16667414
Alignment:
Q  1 tgaaaatcaacaattattgattaaaa-gctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||||| ||||| ||||||| |||||||||||||||||||| ||| ||||| ||||||||| |||  | ||||||||||||||    
T  16667502 tgaaaaacaacacttatttattaaaaagctacatatttaatataaaatacacaagtttcaagttaaaattatcattttaaacttcttaa 16667414  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 27362474 - 27362539
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||||||| |||  || || |||||||| ||| |||| ||||||||||||||||    
T  27362474 aaaagctacatatttaatatgaaatgcacaaattccaagtcaaaattaccactttaaacttcttaa 27362539  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 47326987 - 47326922
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||| ||||||||||||||| |||  || ||||||||||| ||| |||| ||||||||||||||||    
T  47326987 aaaaactacatatttaatatgaaatgcaaaagttccaagtcaaagttaccactttaaacttcttaa 47326922  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 47341783 - 47341718
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||| ||||||||||||||| |||  || ||||||||||| ||| |||| ||||||||||||||||    
T  47341783 aaaaactacatatttaatatgaaatgcaaaagttccaagtcaaagttaccactttaaacttcttaa 47341718  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 49228754 - 49228802
Alignment:
Q  40 tataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||||| ||||||||||| ||| |||||| ||||||||||||||    
T  49228754 tataaaaaacacaagttccaagtcaaagttactaatttaaacttcttaa 49228802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 10813612 - 10813529
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatattt-aatataaaaaacataagttccaagttaaatttactactttaaactt 83  Q
    |||||| |||||||||||  ||||||| ||||||||| ||| ||||||||| || ||  |||| ||| ||||||||||||||||    
T  10813612 tgaaaaccaacaattatttgttaaaagttacatattttaatttaaaaaacacaaattttaagtcaaagttactactttaaactt 10813529  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 49181132 - 49181220
Alignment:
Q  1 tgaaaatcaacaattattgatt-aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||||||| ||| ||| ||||| ||||||||||||||||||  || ||||| |||   |||||||||| ||| ||||||||||    
T  49181132 tgaaaaacaacaatcatttattgaaaagttacatatttaatataaaatgcacaagttacaatacaaatttactattttgaacttcttaa 49181220  T

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Target: scaffold0011 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 13146 - 13233
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||| || |||||| ||||| |||||| ||||||||||||||    
T  13146 tgaaaaccaacaattgttgattaaaagctacatatttaatataaaaaacacaaattccaaattaaagttactattttaaacttcttaa 13233  T

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Target: scaffold0727 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 5752 - 5839
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||| | || ||  |||||||| |||||||||||||||| ||||    
T  5752 tgaaaaccaacaattattgattaaaaactacatatttaatataaaaaatacaaattttaagttaaagttactactttaaactttttaa 5839  T

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Target: scaffold0009 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 43523 - 43602
Alignment:
Q  1 tgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaa 80  Q
    |||||||||||||||||| |||||||| || ||||||||||||||||| |||||||  |||||||| ||| | |||||||    
T  43523 tgaaaatcaacaattattaattaaaagttatatatttaatataaaaaatataagttttaagttaaagttattgctttaaa 43602  T

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Target: scaffold0018 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 182112 - 182190
Alignment:
Q  9 aacaattattgattaaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||| |||||||| |||||||||||||||||||||| ||||| |||  | ||  ||||||||||||||||||||    
T  182112 aacaattatttattaaaagttacatatttaatataaaaaacacaagtttcaa-atcaacgtactactttaaacttcttaa 182190  T

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Target: scaffold0111 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 37209 - 37144
Alignment:
Q  23 aaaagctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    |||||||||||||||||||| |||  || ||||||||||| ||| |||  ||||||||||||||||    
T  37209 aaaagctacatatttaatatgaaatgcacaagttccaagtcaaagttatcactttaaacttcttaa 37144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 8525 - 8444
Alignment:
Q  8 caacaattattgattaaaag-ctacatatttaatataaaaaacataagttccaagttaaatttactactttaaacttcttaa 88  Q
    ||||||||||| |||||||  ||||| |||||||||||||  || |||||| || | ||| ||||||||||||| |||||||    
T  8525 caacaattatttattaaaaaactacaaatttaatataaaatgcacaagttctaaatcaaagttactactttaaatttcttaa 8444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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