View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5452_low_2 (Length: 401)
Name: NF5452_low_2
Description: NF5452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5452_low_2 |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 384
Target Start/End: Complemental strand, 9576673 - 9576312
Alignment:
| Q |
13 |
aatataataactgtaaccaaaagttaggtctaacgatcgcatggtgccatgggagcggaaaaatcagtttaggtttataaattaaacctaataattttgt |
112 |
Q |
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| T |
9576673 |
aatataataactgtaaccaaaagttaggtctaatgatcgcatggtgccatgggagcggaaaaatcagtttaggtttataaattaaacctaataattttgt |
9576574 |
T |
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| Q |
113 |
ttctacaaatccaataatccaattactgcaaaaaagtttttccacagagataacgcttaacaggctttctcaggcttctctcaactcgttccgcttgtct |
212 |
Q |
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| T |
9576573 |
ttctacaaatccaataatccaattgctgcaaaaaagtttttccacagagataacgcttaacaggctt----------ctctcaactcgttccgcttgtct |
9576484 |
T |
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| Q |
213 |
ttagagtcaagtgtagtgatcaacggatgcagcaaatgaaaaggttagtaataatcacatacatgatgatgttgcctaatttgtcgttttgtcaaaatta |
312 |
Q |
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| T |
9576483 |
ttagagtcaagtgtagtgatcaatggatgcagcaaatgaaaaggttagtaataatcacatacatgatgatgttgcctaatttgtcgttttgtcaaaatta |
9576384 |
T |
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| Q |
313 |
cctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttc |
384 |
Q |
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| T |
9576383 |
cctttcaaatctttgattcgattttgctgtgtacaaaaattatggactctcttgtttgaaaacccttatttc |
9576312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 384
Target Start/End: Complemental strand, 42630572 - 42630487
Alignment:
| Q |
299 |
ttttgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttc |
384 |
Q |
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| T |
42630572 |
ttttgtcaaaacttcctcttaaatctttgtttcgatttggttgtgtgcgtaaatcatggtctcttttgtttaaaaattcttatttc |
42630487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 384
Target Start/End: Complemental strand, 3368799 - 3368683
Alignment:
| Q |
265 |
aatcacatacatgatgatgttgcctaatttgtcgttttgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctct |
364 |
Q |
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| T |
3368799 |
aatcacatatatgatgacgttgcct---tcgtcattctgtctaaattacctctcaaatctttgtttcgatttcgttgtgtgcgtaaatcatggtctctct |
3368703 |
T |
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| Q |
365 |
tgtttgaaaacccttatttc |
384 |
Q |
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| T |
3368702 |
tatttgaaaacccttatttc |
3368683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 34287584 - 34287664
Alignment:
| Q |
304 |
tcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttc |
384 |
Q |
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| T |
34287584 |
tcaaaattacctctcaaatctatctttcgattttgttgcatacgcaaatcatggtctccattgtttgaaaacccttatttc |
34287664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 384
Target Start/End: Original strand, 9590 - 9667
Alignment:
| Q |
307 |
aaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttc |
384 |
Q |
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| T |
9590 |
aaattgcctcttaaatctttgaaacgatttagttgtgtacataaatcatggtctcgcttatttgaaaaccctaatttc |
9667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 287550 - 287480
Alignment:
| Q |
304 |
tcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaa |
374 |
Q |
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| T |
287550 |
tcaaaattgcctctaaaatctttaaaacgatttggatgtgtatgtaaatcatggactctcttgtttgaaaa |
287480 |
T |
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