View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5452_low_4 (Length: 288)
Name: NF5452_low_4
Description: NF5452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5452_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 288
Target Start/End: Original strand, 53095802 - 53096075
Alignment:
| Q |
15 |
aacctgtggtcctgcagcaggaagctgatcaatgtaagaagttgaggtatactgatttggtggagttgttggtattggcatgagcccatgctgctgctgt |
114 |
Q |
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| T |
53095802 |
aacctgtggtcctgcagcaggaagctgatcaatgtaagaagttgaggtatactgatttggtggagttgttggtattggcatgagcccatgctgctgttgt |
53095901 |
T |
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| Q |
115 |
atagaccgaaaataaggcacttgacattttgagaactgttctaacctcctacttccacctttggtaaaacagtcttcaacctttaacccgttacctccag |
214 |
Q |
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| T |
53095902 |
atagaccgaaaataaggcacttgagattttgagaactgttctaacctcctaattccacctttggtaaaacagtcttcaacctttaacccgttacctccag |
53096001 |
T |
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| Q |
215 |
ccgacaaggacaaggacaagaagttgaaattctacagaatatgaaatataatcatcagatcatgaggaagaggg |
288 |
Q |
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| T |
53096002 |
ccgacaaggacaaggacaagaagttgaaattctacagaatatgaaatataatcatcagatcatgaggaagaggg |
53096075 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 287
Target Start/End: Original strand, 26143302 - 26143357
Alignment:
| Q |
232 |
aagaagttgaaattctacagaatatgaaatataatcatcagatcatgaggaagagg |
287 |
Q |
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| T |
26143302 |
aagaagttgaagctttgcagaatatgaaatataatcatcagagcatgaggaagagg |
26143357 |
T |
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