View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5452_low_6 (Length: 251)
Name: NF5452_low_6
Description: NF5452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5452_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 33142427 - 33142229
Alignment:
| Q |
1 |
taagctctcgtggatgctctcgttcgttatcgtatcggttaccggcgtcgggattgcgatttagtttccagcagtcataattgcgacttgagtaagagaa |
100 |
Q |
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||||||||||||| | ||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
33142427 |
taagctctcgtggcttctctctttcgttatcgtatcagttaccggtgtcgggattgcgatttagtttgcagcagtcagaattgcgacttgagtaagagaa |
33142328 |
T |
|
| Q |
101 |
tcaaattgaaccttttgcatattcaaagaatcaaattgagtgtttggagaaaaggaggtgaagaagacgatgcttctatctacctgcaaaaagcacaaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33142327 |
tcaaattgaaccttttgcatattcaaagaatcaaattgagtgtttggagaaaaggaggtgaagaagacgatgcttctatctacctgcaaaaagcacaaa |
33142229 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 33040190 - 33040388
Alignment:
| Q |
1 |
taagctctcgtggatgctctcgttcgttatcgtatcggttaccggcgtcgggattgcgatttagtttccagcagtcataattgcgacttgagtaagagaa |
100 |
Q |
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||||||||||||| | ||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
33040190 |
taagctctcgtggcttctctctttcgttatcgtatcagttaccggtgtcgggattgcgatttagtttgcagcagtcacaattgcgacttgagtaagagaa |
33040289 |
T |
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| Q |
101 |
tcaaattgaaccttttgcatattcaaagaatcaaattgagtgtttggagaaaaggaggtgaagaagacgatgcttctatctacctgcaaaaagcacaaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33040290 |
tcaaattgaaccttttgcatattcaaagaatcaaattgagtgtttggagaaaaggaggtgaagaagacgatgcttctatctacctgcaaaaagcacaaa |
33040388 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 2408746 - 2408944
Alignment:
| Q |
1 |
taagctctcgtggatgctctcgttcgttatcgtatcggttaccggcgtcgggattgcgatttagtttccagcagtcataattgcgacttgagtaagagaa |
100 |
Q |
| |
|
||||||||||||| | ||||| |||||||||||||| ||||| || ||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
2408746 |
taagctctcgtggcttctctctttcgttatcgtatcagttacgggtgtcgggattgcgatttagtttgcagcagtcacaattgcgacttgagtaagagaa |
2408845 |
T |
|
| Q |
101 |
tcaaattgaaccttttgcatattcaaagaatcaaattgagtgtttggagaaaaggaggtgaagaagacgatgcttctatctacctgcaaaaagcacaaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2408846 |
tcaaattgaaccttttgcatattcaaagaatcaaattgagtgtttggagaaaaggaggtgaagaagacgatgcttctatctacctgcaaaaagcacaaa |
2408944 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 16314967 - 16314769
Alignment:
| Q |
1 |
taagctctcgtggatgctctcgttcgttatcgtatcggttaccggcgtcgggattgcgatttagtttccagcagtcataattgcgacttgagtaagagaa |
100 |
Q |
| |
|
||||||||||||| | ||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| |
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| T |
16314967 |
taagctctcgtggcttctctctttcgttatcgtatcagttaccggtgtcgggattgcgatttagtttgcagcagtcacaattacgacttgagtaagagaa |
16314868 |
T |
|
| Q |
101 |
tcaaattgaaccttttgcatattcaaagaatcaaattgagtgtttggagaaaaggaggtgaagaagacgatgcttctatctacctgcaaaaagcacaaa |
199 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16314867 |
tcaaattgaaccttttgcatattcaaagaatcaaattgagtgtttggagaaaaggaggtgaagaagacgatgcttctatctacctgcaaaaagcacaaa |
16314769 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 42900559 - 42900361
Alignment:
| Q |
1 |
taagctctcgtggatgctctcgttcgttatcgtatcggttaccggcgtcgggattgcgatttagtttccagcagtcataattgcgacttgagtaagagaa |
100 |
Q |
| |
|
||||||||||||| | ||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
42900559 |
taagctctcgtggcttctctctttcgttatcgtatcagttaccggtgtcgggattgcgatttagtttgcagcagtcacaattgcgacttgagtaagagaa |
42900460 |
T |
|
| Q |
101 |
tcaaattgaaccttttgcatattcaaagaatcaaattgagtgtttggagaaaaggaggtgaagaagacgatgcttctatctacctgcaaaaagcacaaa |
199 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42900459 |
tcaaattgaaccttttgcatattcaaagaatcaaattgagtgtttggagaaaaggaggtgaagaagacaatgcttctatctacctgcaaaaagcacaaa |
42900361 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 49882421 - 49882619
Alignment:
| Q |
1 |
taagctctcgtggatgctctcgttcgttatcgtatcggttaccggcgtcgggattgcgatttagtttccagcagtcataattgcgacttgagtaagagaa |
100 |
Q |
| |
|
|||||||| |||| | ||||| |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
49882421 |
taagctcttgtggcttctctctttcgttatcgtatcagttaccgatgtcgggattgcgatttagtttgcagcagtcacaattgcgacttgagtaagagaa |
49882520 |
T |
|
| Q |
101 |
tcaaattgaaccttttgcatattcaaagaatcaaattgagtgtttggagaaaaggaggtgaagaagacgatgcttctatctacctgcaaaaagcacaaa |
199 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49882521 |
tcaaattgaaccttttgcatattcaaagaatcaaattgagtgtttggagaaaaggaggtgaagaagacgatgcttctatctacctgcaaaaagcacaaa |
49882619 |
T |
|
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