View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5452_low_9 (Length: 231)

Name: NF5452_low_9
Description: NF5452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5452_low_9
NF5452_low_9
[»] chr5 (6 HSPs)
chr5 (110-231)||(2408580-2408701)
chr5 (117-205)||(27037393-27037481)
chr5 (117-205)||(21181114-21181202)
chr5 (9-42)||(16552668-16552701)
chr5 (9-42)||(16668823-16668856)
chr5 (9-42)||(33868159-33868192)
[»] chr1 (11 HSPs)
chr1 (111-231)||(33040025-33040145)
chr1 (9-43)||(31529694-31529728)
chr1 (9-50)||(51801762-51801803)
chr1 (9-44)||(33097407-33097442)
chr1 (9-47)||(44688639-44688677)
chr1 (9-42)||(13590471-13590504)
chr1 (5-42)||(30788352-30788389)
chr1 (9-42)||(35198210-35198243)
chr1 (9-42)||(37639345-37639378)
chr1 (9-46)||(44260518-44260555)
chr1 (5-53)||(2741029-2741077)
[»] chr2 (9 HSPs)
chr2 (110-231)||(16315012-16315133)
chr2 (110-231)||(42900592-42900713)
chr2 (5-42)||(25995290-25995327)
chr2 (10-41)||(40853709-40853740)
chr2 (9-47)||(16142104-16142142)
chr2 (5-42)||(4281813-4281850)
chr2 (9-42)||(5098720-5098753)
chr2 (9-46)||(13081889-13081926)
chr2 (9-46)||(39548042-39548079)
[»] chr3 (7 HSPs)
chr3 (110-231)||(33142472-33142593)
chr3 (9-46)||(53594968-53595005)
chr3 (9-42)||(23755289-23755322)
chr3 (9-42)||(26662567-26662600)
chr3 (9-42)||(32232995-32233028)
chr3 (9-46)||(39195137-39195174)
chr3 (9-42)||(51682031-51682064)
[»] chr4 (5 HSPs)
chr4 (115-231)||(49882260-49882376)
chr4 (9-43)||(16298924-16298958)
chr4 (9-42)||(24686576-24686609)
chr4 (9-42)||(25574157-25574190)
chr4 (9-46)||(43852649-43852686)
[»] chr8 (7 HSPs)
chr8 (5-52)||(13526696-13526743)
chr8 (5-52)||(13616231-13616278)
chr8 (9-43)||(10443599-10443633)
chr8 (9-51)||(28698610-28698652)
chr8 (9-46)||(40247314-40247351)
chr8 (187-231)||(37640956-37641000)
chr8 (9-42)||(2522871-2522904)
[»] chr7 (4 HSPs)
chr7 (9-47)||(34875488-34875526)
chr7 (9-42)||(5757390-5757423)
chr7 (148-205)||(29006571-29006627)
chr7 (10-42)||(6797415-6797447)
[»] chr6 (2 HSPs)
chr6 (9-46)||(16968052-16968089)
chr6 (5-42)||(18611192-18611229)


Alignment Details
Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 2408580 - 2408701
Alignment:
Q  110 ttttttatatatactcctactgcagtgctcaccctgtgattgtgagcatcttctccctcacggcaccccacaactttacttcctaaaccgtccacaccaa 209  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2408580 ttttttatatatactccaactgcagtgctcaccctgtgattgtgagcatcttctctctcacggcaccccacaactttacttcctaaaccgtccacaccaa 2408679  T
Q  210 ttccttcctccgccgatctcaa 231  Q
    |||||||| |||||||||||||    
T  2408680 ttccttccgccgccgatctcaa 2408701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 27037481 - 27037393
Alignment:
Q  117 tatatactcctactgcagtgctcaccc-tgtgattgtgagcatcttctccctcacggcaccccacaactttacttcctaaaccgtccaca 205  Q
    |||||||| ||||||||||||||||   ||||||||||| ||||||||||||||||||||||| ||| || |||| |||||||| |||||    
T  27037481 tatatactactactgcagtgctcacttatgtgattgtgatcatcttctccctcacggcacccc-caagttcactttctaaaccgaccaca 27037393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 21181202 - 21181114
Alignment:
Q  117 tatatactcctactgcagtgctcaccc-tgtgattgtgagcatcttctccctcacggcaccccacaactttacttcctaaaccgtccaca 205  Q
    |||||||| ||||||| ||||||||   ||||||||||| ||||||||||||||||||||||| ||| || |||| |||||||| |||||    
T  21181202 tatatactactactgctgtgctcacttatgtgattgtgatcatcttctccctcacggcacccc-caagttcactttctaaaccgaccaca 21181114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 16552668 - 16552701
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataacttt 42  Q
    ||||||||||||||| ||||||||||||||||||    
T  16552668 gtgcataaggaaatgacttatgcataataacttt 16552701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 16668823 - 16668856
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataacttt 42  Q
    ||||||||||||||| ||||||||||||||||||    
T  16668823 gtgcataaggaaatgtcttatgcataataacttt 16668856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 33868192 - 33868159
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataacttt 42  Q
    ||||||||||||||| ||||||||||||||||||    
T  33868192 gtgcataaggaaatgacttatgcataataacttt 33868159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 111 - 231
Target Start/End: Original strand, 33040025 - 33040145
Alignment:
Q  111 tttttatatatactcctactgcagtgctcaccctgtgattgtgagcatcttctccctcacggcaccccacaactttacttcctaaaccgtccacaccaat 210  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33040025 tttttatatatactccaactgcagtgctcaccctgtgattgtgagcatcttctctctcacggcaccccacaactttacttcctaaaccgtccacaccaat 33040124  T
Q  211 tccttcctccgccgatctcaa 231  Q
    ||||||| |||||||||||||    
T  33040125 tccttccgccgccgatctcaa 33040145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 31529694 - 31529728
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataactttg 43  Q
    |||||||||||||||||||||||||||||||||||    
T  31529694 gtgcataaggaaatggcttatgcataataactttg 31529728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 51801762 - 51801803
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataactttgccctaaa 50  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  51801762 gtgcataaggaaatgacttatgcataataactttgctctaaa 51801803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 33097442 - 33097407
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataactttgc 44  Q
    ||||||||||||||| ||||||||||||||||||||    
T  33097442 gtgcataaggaaatgacttatgcataataactttgc 33097407  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 44688639 - 44688677
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataactttgccct 47  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  44688639 gtgcataaggaaatgacttatgcatgataactttgccct 44688677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 13590504 - 13590471
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataacttt 42  Q
    ||||||||||||||| ||||||||||||||||||    
T  13590504 gtgcataaggaaatgacttatgcataataacttt 13590471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 30788389 - 30788352
Alignment:
Q  5 cagagtgcataaggaaatggcttatgcataataacttt 42  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  30788389 cagactgcataaggaaatgacttatgcataataacttt 30788352  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 35198210 - 35198243
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataacttt 42  Q
    ||||||||||||||| ||||||||||||||||||    
T  35198210 gtgcataaggaaatgtcttatgcataataacttt 35198243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 37639378 - 37639345
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataacttt 42  Q
    ||||||||||||||| ||||||||||||||||||    
T  37639378 gtgcataaggaaatgtcttatgcataataacttt 37639345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 44260555 - 44260518
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataactttgccc 46  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  44260555 gtgcataaggaaatgacttacgcataataactttgccc 44260518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 2741077 - 2741029
Alignment:
Q  5 cagagtgcataaggaaatggcttatgcataataactttgccctaaattt 53  Q
    |||||| ||||| |||||| |||||||||||||||||| ||| ||||||    
T  2741077 cagagtacataaagaaatgacttatgcataataactttaccccaaattt 2741029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 16315133 - 16315012
Alignment:
Q  110 ttttttatatatactcctactgcagtgctcaccctgtgattgtgagcatcttctccctcacggcaccccacaactttacttcctaaaccgtccacaccaa 209  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16315133 ttttatatatatactccaactgcagtgctcaccctgtgattgtgagcatcttctctctcacggcaccccacaactttacttcctaaaccgtccacaccaa 16315034  T
Q  210 ttccttcctccgccgatctcaa 231  Q
    |||||||| |||||||||||||    
T  16315033 ttccttccgccgccgatctcaa 16315012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 42900713 - 42900592
Alignment:
Q  110 ttttttatatatactcctactgcagtgctcaccctgtgattgtgagcatcttctccctcacggcaccccacaactttacttcctaaaccgtccacaccaa 209  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||    
T  42900713 ttttttatatatactccaactgcaatgctcaccctgtgattgtgagcatcttctctctcacggcaccccacagctttacttcccaaaccgtccacaccaa 42900614  T
Q  210 ttccttcctccgccgatctcaa 231  Q
    |||||||| | |||||||||||    
T  42900613 ttccttccgcagccgatctcaa 42900592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 25995327 - 25995290
Alignment:
Q  5 cagagtgcataaggaaatggcttatgcataataacttt 42  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  25995327 cagagtgcataaggaaatgtcttatgcataataacttt 25995290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 40853709 - 40853740
Alignment:
Q  10 tgcataaggaaatggcttatgcataataactt 41  Q
    ||||||||||||||||||||||||||||||||    
T  40853709 tgcataaggaaatggcttatgcataataactt 40853740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 16142104 - 16142142
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataactttgccct 47  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  16142104 gtgcataaggaaatggcttgtgcataataaatttgccct 16142142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 4281813 - 4281850
Alignment:
Q  5 cagagtgcataaggaaatggcttatgcataataacttt 42  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  4281813 cagagtacataaggaaatgtcttatgcataataacttt 4281850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 5098753 - 5098720
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataacttt 42  Q
    ||||||||||||||| ||||||||||||||||||    
T  5098753 gtgcataaggaaatgacttatgcataataacttt 5098720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 13081889 - 13081926
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataactttgccc 46  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  13081889 gtgcataatgaaatgacttatgcataataactttgccc 13081926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 39548079 - 39548042
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataactttgccc 46  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  39548079 gtgcataaggaaatgacttatgtataataactttgccc 39548042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 8e-51; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 33142593 - 33142472
Alignment:
Q  110 ttttttatatatactcctactgcagtgctcaccctgtgattgtgagcatcttctccctcacggcaccccacaactttacttcctaaaccgtccacaccaa 209  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  33142593 ttttttatatatactccaactgcagtgttcaccctgtgattgtgagcatcttctctctcacggcactccacaactttacttcctaaaccgtccacaccaa 33142494  T
Q  210 ttccttcctccgccgatctcaa 231  Q
    |||||||| |||||||||||||    
T  33142493 ttccttccgccgccgatctcaa 33142472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 53595005 - 53594968
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataactttgccc 46  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  53595005 gtgcataagaaaatggcttatgcataataactttgccc 53594968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 23755322 - 23755289
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataacttt 42  Q
    ||||||||||||||| ||||||||||||||||||    
T  23755322 gtgcataaggaaatgtcttatgcataataacttt 23755289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 26662567 - 26662600
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataacttt 42  Q
    |||||||||||||||||||||||| |||||||||    
T  26662567 gtgcataaggaaatggcttatgcacaataacttt 26662600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 32233028 - 32232995
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataacttt 42  Q
    ||||||||||||||| ||||||||||||||||||    
T  32233028 gtgcataaggaaatgacttatgcataataacttt 32232995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 39195137 - 39195174
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataactttgccc 46  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  39195137 gtgcatgaggaaatgacttatgcataataactttgccc 39195174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 51682031 - 51682064
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataacttt 42  Q
    ||||||||||||||| ||||||||||||||||||    
T  51682031 gtgcataaggaaatgacttatgcataataacttt 51682064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 115 - 231
Target Start/End: Original strand, 49882260 - 49882376
Alignment:
Q  115 tatatatactcctactgcagtgctcaccctgtgattgtgagcatcttctccctcacggcaccccacaactttacttcctaaaccgtccacaccaattcct 214  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49882260 tatatatactccaactgcagtgctcaccctgtgattgtgagcatcttctctctcacggcaccccacaactttacttcctaaaccatccacaccaattcct 49882359  T
Q  215 tcctccgccgatctcaa 231  Q
    ||| |||||||||||||    
T  49882360 tccgccgccgatctcaa 49882376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 16298958 - 16298924
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataactttg 43  Q
    ||||||||||||||| |||||||||||||||||||    
T  16298958 gtgcataaggaaatgacttatgcataataactttg 16298924  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 24686609 - 24686576
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataacttt 42  Q
    ||||||||||||||| ||||||||||||||||||    
T  24686609 gtgcataaggaaatgacttatgcataataacttt 24686576  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 25574157 - 25574190
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataacttt 42  Q
    ||||||||||||||| ||||||||||||||||||    
T  25574157 gtgcataaggaaatgacttatgcataataacttt 25574190  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 43852649 - 43852686
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataactttgccc 46  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  43852649 gtgcataagaaaatgacttatgcataataactttgccc 43852686  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 13526696 - 13526743
Alignment:
Q  5 cagagtgcataaggaaatggcttatgcataataactttgccctaaatt 52  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||    
T  13526696 cagagtacataaggaaatggcttatgcataataactttgccccaaatt 13526743  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 13616231 - 13616278
Alignment:
Q  5 cagagtgcataaggaaatggcttatgcataataactttgccctaaatt 52  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||    
T  13616231 cagagtacataaggaaatggcttatgcataataactttgccccaaatt 13616278  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 10443599 - 10443633
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataactttg 43  Q
    |||||||||||||||||||||||||||||||||||    
T  10443599 gtgcataaggaaatggcttatgcataataactttg 10443633  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 28698610 - 28698652
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataactttgccctaaat 51  Q
    ||||||||| |||||||||||||||||||||||||||| ||||    
T  28698610 gtgcataagaaaatggcttatgcataataactttgccccaaat 28698652  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 40247314 - 40247351
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataactttgccc 46  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  40247314 gtgcataaggaaatgacttatgcataataactttgccc 40247351  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 37640956 - 37641000
Alignment:
Q  187 acttcctaaaccgtccacaccaattccttcctccgccgatctcaa 231  Q
    |||||||| |||||||||||||| ||||||| |||||||||||||    
T  37640956 acttcctacaccgtccacaccaactccttcccccgccgatctcaa 37641000  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 2522904 - 2522871
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataacttt 42  Q
    ||||||||||||||| ||||||||||||||||||    
T  2522904 gtgcataaggaaatgacttatgcataataacttt 2522871  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 34875526 - 34875488
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataactttgccct 47  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34875526 gtgcataaggaaatggcttatgcataataactttgccct 34875488  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 5757423 - 5757390
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataacttt 42  Q
    ||||||||||||||| ||||||||||||||||||    
T  5757423 gtgcataaggaaatgtcttatgcataataacttt 5757390  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 29006571 - 29006627
Alignment:
Q  148 attgtgagcatcttctccctcacggcaccccacaactttacttcctaaaccgtccaca 205  Q
    ||||||| ||||||||||||||||||||||| ||| || |||| |||||||| |||||    
T  29006571 attgtgatcatcttctccctcacggcacccc-caagttcactttctaaaccgaccaca 29006627  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 6797415 - 6797447
Alignment:
Q  10 tgcataaggaaatggcttatgcataataacttt 42  Q
    |||||||||||||| ||||||||||||||||||    
T  6797415 tgcataaggaaatgacttatgcataataacttt 6797447  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 16968052 - 16968089
Alignment:
Q  9 gtgcataaggaaatggcttatgcataataactttgccc 46  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  16968052 gtgcataagaaaatggcttatgcataataacgttgccc 16968089  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 18611229 - 18611192
Alignment:
Q  5 cagagtgcataaggaaatggcttatgcataataacttt 42  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  18611229 cagagtgcataaagaaatgtcttatgcataataacttt 18611192  T

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