View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5453-Insertion-1 (Length: 960)
Name: NF5453-Insertion-1
Description: NF5453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5453-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 739; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 8 - 923
Target Start/End: Original strand, 28669443 - 28670351
Alignment:
| Q |
8 |
agaaatgaatgaagatatgaattgtcattaatgaatcagtgattacagcaagtatatatagacagaatgcttgtgtacattaagctatcatatgttatag |
107 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
28669443 |
agaaatgaatgaagatatgaattatcattaatgaatcagtgattacagcaagtatatatagacagaatgcttgtctacattaagctatcatgtgttatag |
28669542 |
T |
|
| Q |
108 |
agtagctaattactctacgactagttgcttagactgcaagtaattatagtcaactgatagtgttgacttctgtatcttcattatccaataagggattagn |
207 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28669543 |
tgtagctaattactctgcgactagttgcttagactgcaagtaataatagtcagctgatagtgttgacttctgtatcttcattatccaataagggattagt |
28669642 |
T |
|
| Q |
208 |
nnnnnnagctactcacctgatacatgtactataacaagtttttcaaaacaatctaataaatttnnnnnnn-taattaaattaatttacaagggtaacaat |
306 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
28669643 |
ttttttagctactcacctgatacatgtactataacaattttttcaaaacaatctaataaatttaaaaaaaataattaagttaatttacaagggtaacaat |
28669742 |
T |
|
| Q |
307 |
atattacacgaactacaatagcttaacaataaatatttattgaaaatgaaatgaacactaagttgcttctttgtgtgacaacttgaagggtgatagtgca |
406 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28669743 |
atattacacggactacaatagcttaacaataaatatttattgaaaatgaaatgaacactaagttgcttctttgtgtgacaacttgaagggtgatagtgca |
28669842 |
T |
|
| Q |
407 |
gaagctccaaggccgtttgcaaaacgatatgccaaatactctttcaaagaagtatctctgtatattggtgaattttctttagataacagttcctttattg |
506 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
28669843 |
gaagctccaaggccatttgcaaaacgatatgccaaatactctttcaaagaagtatctctgtatattggtggattttctttagataacaattcctttattg |
28669942 |
T |
|
| Q |
507 |
gtcctatcactttttccataccctcatgtgagtaatcatgttgtgttctaaaaaaggttgcaactgaaattcttgggcctgcatggtttgctaaaactct |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28669943 |
gtcctatcactttttccataccctcatgtgagtaatcatgttgtgttctaaaaaaggttgcaactgaaattcttgggcctgcatggtttgctaaaactct |
28670042 |
T |
|
| Q |
607 |
gtgttgaacacttttgaacttgtcattactcacaagctggagaaagaaaaattaatattgatcatagtcaaaaatcaattatatttatgagctttgatac |
706 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28670043 |
gtgttgaacacttgtgaacttgtcattactcacaagctggagaaagaaaaattaatattgatcatagtcaaaaatcaattatatttatgagctttgatac |
28670142 |
T |
|
| Q |
707 |
attgttactctacatttcaccatgttactatagttttcagtgttgtcatttgtgtttatctagatacaattatttattaagttgaatgaaaatactaatt |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
28670143 |
attgttactctacatttcaccatgttactatagttttcagtgttgtcatttgtgtttatctagatacaattatttattaagttgaatgaaaatactaa-t |
28670241 |
T |
|
| Q |
807 |
tgtatgcatgatctactcacctgtagaagatctccaatggttcactacaagaggctccatgaatgggaaggtacattcaattccactgattgtcaatgaa |
906 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||| ||||||||||||| ||||| |
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| T |
28670242 |
tgtatgcatgatgtactcacctgtagaagatctccaat-gttcactacaaga-gctccatgaatggg-aggtaca-tcaa-tccactgattgtc-atgaa |
28670335 |
T |
|
| Q |
907 |
gaaatttgtaggccacc |
923 |
Q |
| |
|
| |||||||| |||||| |
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|
| T |
28670336 |
g-aatttgtaagccacc |
28670351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 384 - 676
Target Start/End: Original strand, 28647715 - 28648005
Alignment:
| Q |
384 |
acaacttgaagggtgatagtgcagaagctccaaggccgtttgcaaaacgatatgccaaatactctttcaaagaagtatctctgtatattggtgaattttc |
483 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||| |||| ||||||||| ||| |||||||||||||| |||||| |||||||||| | ||||| |
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| T |
28647715 |
acaacttgaaaggtgatagtgcagaagctccaaacccgcttgccaaacgatatttcaagtactctttcaaagatgtatctttgtatattggagggttttc |
28647814 |
T |
|
| Q |
484 |
tttagataacagttcctttattggtcctatcactttttccataccctcatgtgagtaatcatgttgtgttctaaaaaaggttgcaactgaaattcttggg |
583 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||||||| || |||||| | || | ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28647815 |
tttagataaaagttccttgattggtccaatcacttttggtatgccctcaggagaatgatcatgttgtgttctaaaaaaggttgcaactgaaattcttggg |
28647914 |
T |
|
| Q |
584 |
cctgcatggtttgctaaaactctgtgttgaacacttttgaacttgtcattactcacaagctggagaaagaaaaattaatattgatcatagtca |
676 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| | |||| |||||||| |||||||||||||| |
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| T |
28647915 |
cctgcatggtttgctaaaactctgtgttgaacacttctgtacttgtcattactcacaagctgtaaaaag-aaaattaa-attgatcatagtca |
28648005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 384 - 656
Target Start/End: Original strand, 28638973 - 28639245
Alignment:
| Q |
384 |
acaacttgaagggtgatagtgcagaagctccaaggccgtttgcaaaacgatatgccaaatactctttcaaagaagtatctctgtatattggtgaattttc |
483 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| ||| |||| ||||||||| ||| ||||||||||||||||| ||| |||||||||||| ||||| |
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| T |
28638973 |
acaacttgaaaggggatagtgcagaagctccaaaaccgcttgccaaacgatatttcaagtactctttcaaagaagtgtctttgtatattggtgggttttc |
28639072 |
T |
|
| Q |
484 |
tttagataacagttcctttattggtcctatcactttttccataccctcatgtgagtaatcatgttgtgttctaaaaaaggttgcaactgaaattcttggg |
583 |
Q |
| |
|
|| |||||| |||||||| |||||||| |||| |||| || |||||| | |||| |||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
28639073 |
ttcagataaaagttccttgattggtccaatcaattttggtatgccctcaggagagtgatcatgttgtgttctaaagagggttgcaactgaaattcttgga |
28639172 |
T |
|
| Q |
584 |
cctgcatggtttgctaaaactctgtgttgaacacttttgaacttgtcattactcacaagctggagaaagaaaa |
656 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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|
| T |
28639173 |
cctgcatgttttgctaaaactctgtgttgaacacttttaaacttgtcattactcacaagctgcagaaagaaaa |
28639245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 401 - 657
Target Start/End: Original strand, 28672910 - 28673157
Alignment:
| Q |
401 |
agtgcagaagctccaaggccgtttgcaaaacgatatgccaaatactctttcaaagaagtatctctgtatattggtgaattttctttagataacagttcct |
500 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||| |||||| |||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| |
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|
| T |
28672910 |
agtgcagaaaatccaatgccgtttgtaaaacgatgtgccaagaactctttcaaagaagtgtctctatatattggtagattttctttagataacagttcct |
28673009 |
T |
|
| Q |
501 |
ttattggtcctatcactttttccataccctcatgtgagtaatcatgttgtgttctaaaaaaggttgcaactgaaattcttgggcctgcatggtttgctaa |
600 |
Q |
| |
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| ||||| || ||||||||| ||| ||||| | | |||||| | |||||||| || ||| | ||||||||||||||| ||||| |||||||| |
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|
| T |
28673010 |
tgattggaccaatcacttttggcattccctc------ggattcatgt---gctctaaaaagggatgcgattgaaattcttgggccagcatgttttgctaa |
28673100 |
T |
|
| Q |
601 |
aactctgtgttgaacacttttgaacttgtcattactcacaagctggagaaagaaaaa |
657 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||| ||| ||||||||||| |
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|
| T |
28673101 |
aactctgtgttgaacacttgtgaacttatcattactcacaatctgtagaaagaaaaa |
28673157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 550 - 645
Target Start/End: Original strand, 28690058 - 28690153
Alignment:
| Q |
550 |
tgttctaaaaaaggttgcaactgaaattcttgggcctgcatggtttgctaaaactctgtgttgaacacttttgaacttgtcattactcacaagctg |
645 |
Q |
| |
|
||||||||| || | ||| |||||||||||||| ||| ||| ||||||||||||||||||||||| || |||||||||||||| | |||||||| |
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|
| T |
28690058 |
tgttctaaacaatgatgctactgaaattcttggacctatatgctttgctaaaactctgtgttgaacgctaatgaacttgtcattagttacaagctg |
28690153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 809 - 874
Target Start/End: Original strand, 28639378 - 28639441
Alignment:
| Q |
809 |
tatgcatgatctactcacctgtagaagatctccaatggttcactacaagaggctccatgaatggga |
874 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| | ||||||||||||| ||||||||||||||| |
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|
| T |
28639378 |
tatgcatgatgaactcacctgtagaagatctccga-cgttcactacaaga-gctccatgaatggga |
28639441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 79 - 198
Target Start/End: Complemental strand, 11921996 - 11921877
Alignment:
| Q |
79 |
tgtgtacattaagctatcatatgttatagagtagctaattactctacgactagttgcttagactgcaagtaattatagtcaactgatagtgttgacttct |
178 |
Q |
| |
|
|||||||||||||||||||| || |||| ||| ||||||||||| |||||||| ||| || |||||| |||||||||||||||||||||||||| |
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| T |
11921996 |
tgtgtacattaagctatcatgtgctataatgtatgtaattactctaagactagtttattaagttgtaagtaacaatagtcaactgatagtgttgacttct |
11921897 |
T |
|
| Q |
179 |
gtatcttcattatccaataa |
198 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
11921896 |
gtatcttcattatccaataa |
11921877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 11927163 - 11927081
Alignment:
| Q |
114 |
taattactctacgactagttgcttagactgcaagtaattatagtcaactgatagtgttgacttctgtatcttcattatccaata |
197 |
Q |
| |
|
||||||||||| ||||||||||||| || ||||||| |||||||||| ||||||||||||| ||||||| |||||||||||| |
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|
| T |
11927163 |
taattactctaa-actagttgcttaggttgtaagtaataatagtcaactaatagtgttgacttttgtatctacattatccaata |
11927081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 25633426 - 25633531
Alignment:
| Q |
50 |
ttacagcaagtatatatagacagaatgcttgtgtac----attaagctatcatatgttatagagtagctaattactctacga-ctagttgcttagactgc |
144 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| ||||||||||||||| ||||| |||||||| |||||| || |||||||||||| |||| |
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| T |
25633426 |
ttacagcaagtatatatagaca-tatgtttgtgtacattaattaagctatcatatactatagtgtagctaagtactcttagatctagttgcttaggctgc |
25633524 |
T |
|
| Q |
145 |
aagtaat |
151 |
Q |
| |
|
||||||| |
|
|
| T |
25633525 |
aagtaat |
25633531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 8072735 - 8072807
Alignment:
| Q |
126 |
gactagttgcttagactgcaagtaattatagtcaactgatagtgttgac-ttctgtatcttcattatccaata |
197 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||||||||||||||||| |||| |||||| |||| |||||| |
|
|
| T |
8072735 |
gactagttgcttaggctgcaagtcatgttagtcaactgatagtgttgactttctatatcttgattaaccaata |
8072807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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