View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5453-Insertion-10 (Length: 522)
Name: NF5453-Insertion-10
Description: NF5453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5453-Insertion-10 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 6e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 45167780 - 45167559
Alignment:
| Q |
7 |
agtcccgtcttcgatacctaccataacgttaacggtgtgtctaacgaaaaataaaacaaaagtgagaaatttggatctagatatattttgtataannnnn |
106 |
Q |
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| T |
45167780 |
agtcccgtcttcgatacctaccataacgttaacggtgtgtctaacaaaaaataaaacaaaagtgagaaatttggatctagatatattttgtataattttt |
45167681 |
T |
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| Q |
107 |
nnacaaaaaactctacttcattcatcatg----atatgacttcaaatctaaagtcataactacatcaatgcaaaagggagtttcttccatcgaaacaaga |
202 |
Q |
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| T |
45167680 |
ttacaaaaaactctacttcattcatcatgatatatatgacttcaaatctaaagtcataactacatcaatgcaaaagggagtttcttccatcgaaacaaga |
45167581 |
T |
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| Q |
203 |
tcagatgaattgatattgtata |
224 |
Q |
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|||||||||||||||||||||| |
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| T |
45167580 |
tcagatgaattgatattgtata |
45167559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 232 - 522
Target Start/End: Complemental strand, 45167287 - 45166987
Alignment:
| Q |
232 |
taggttatctcatatcatgtnnnnnnntaactcagtattcaccaatttttatataatcgctctctc-------------tcacttataacacaatctctc |
318 |
Q |
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| T |
45167287 |
taggttatctcatatcatgtaaaaaaataactcagtattcaccaatttttatataattgctctctcaccactctctctctcacttagaacgaaatctctc |
45167188 |
T |
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| Q |
319 |
tccctctccctccatcaatccaaatccggtcaccaccactttgatgtgcactttgcactatatattttaatgtacaaaaca--nnnnnnnnataagatat |
416 |
Q |
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| T |
45167187 |
tccctctccctccaccaacccaactccggtcaccaccactttgatgtgcactttgcactatatactttgatgtacaaaacattttttttttataagatat |
45167088 |
T |
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| Q |
417 |
ccttaattaagataaaagagacttgacttgtgtcatctatctaaatatttttggtttttgtgaacacaactttgatctaatgaacttgcgtatatacctc |
516 |
Q |
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| T |
45167087 |
atttgattaagataaaaga-----gacttgtgtcatctatctaaatatttttgatttttgtgaacacagctttgatctaatgaacttacgtatatacttc |
45166993 |
T |
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| Q |
517 |
accgcc |
522 |
Q |
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|||||| |
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| T |
45166992 |
accgcc |
45166987 |
T |
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