View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5453-Insertion-2 (Length: 923)
Name: NF5453-Insertion-2
Description: NF5453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5453-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 752; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 752; E-Value: 0
Query Start/End: Original strand, 6 - 885
Target Start/End: Original strand, 36329132 - 36330007
Alignment:
| Q |
6 |
catttttctagtcaaatctttatgttttcgacaattttcatccatcgcagcacgagtttcttcatatttgtgatttaaaccgtgttgtttaacattcttt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36329132 |
catttttctagtcaaatctttatgttttcgacaattttcatccatcgcagcacgagtttcttcatatttgtgatttaaaccgtgttgtttaacattcttt |
36329231 |
T |
|
| Q |
106 |
gcccaccgattatggtgtgtgtgtctcagagtcatgcgttcctaaaacaatcagaagtgagaacaagactcataataaaaaatttcctctttcaaaaaca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
36329232 |
gcccaccgattatggtgtgtgtgtctcagagtcatgcgttcctaaaacaatcagaagtgagaacaagactcacaataaaaaatttcctctttcaaaaaaa |
36329331 |
T |
|
| Q |
206 |
ataaataaagacactagatatacctctgccctcttaaaatattttttcatatcatatttcttagcaactttagagtccatttcaatccgagaagactctg |
305 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36329332 |
ataaataaagacactagatatacctctgctctcttaaaatattttttcatatcatatttcttagcaactttagagtccatttcaatccgagaagactctg |
36329431 |
T |
|
| Q |
306 |
ccttcaacctatctttcttcaggtgacgatgaaacatccctgactttatctttttaatacgttttgccttcttttcattacaaaaaagaaggttcctcag |
405 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36329432 |
acttcaacctatctttcttaaggtgacgatgaaacgtccctgactttatctttttaatacgttttgccttcttttcattacaaaaaagaaggctcctcag |
36329531 |
T |
|
| Q |
406 |
tttggcccgattttgcctttctctccggtcttctttagaaacctttcatgcatcataaacgacatgaaacaatgcaaatcatcaatacacaaataaatac |
505 |
Q |
| |
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| T |
36329532 |
tttggcccgattttgcctttctttccgatcttctttagaaacctttcatgcatcataaacgacatgaaacaatgcaaatcatcaatacacaaataaatac |
36329631 |
T |
|
| Q |
506 |
aagtcaaatgcatcacagacaacatcaatnnnnnnngaatgctttgcaaacagaaatataacaatgtggttagtgcttattttatccttaaactccaaaa |
605 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36329632 |
aagtcaaatgcatcacagacaacatcaataaaaaaagaatgctttgcaaacagaaatataacaatgtggttagtgcttattttattcttaaactccaaaa |
36329731 |
T |
|
| Q |
606 |
gacacttgaaatttgaatacaggct-aaaatctcaaaatacatttgaacttaaatttttcatattatgctagtcacgagggttatggcttgtctactacg |
704 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36329732 |
gacacttgaaatttgaatacaggctaaaaatctcaaaatacatttgaacttaaatttttcatattatgctagtcaagagggttatggcttgtctactacg |
36329831 |
T |
|
| Q |
705 |
tcatctcataatgtatcaagaatatatacatcacttttgggcagtagtaattgaatgtgtgtgaaattaaagtccatattttattcatccatgctgctaa |
804 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36329832 |
tcatctcataatgtatcaagaatatatacatcactttt-ggcagtagtaattgaatgtgtgtgaaattaaagtccacattttattcatccatgctgctaa |
36329930 |
T |
|
| Q |
805 |
aattttgaacataatttgataaaaggggtaaaaggagttaagaacggctgagaaattagagggagaagcgaacgaaatatt |
885 |
Q |
| |
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|||||| ||||||||||||||||| |||||||| || |||||||| ||||||||| ||||||||||||| ||||||||||| |
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| T |
36329931 |
aattttcaacataatttgataaaa-gggtaaaa-gacttaagaac-gctgagaaa-tagagggagaagcaaacgaaatatt |
36330007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 347 - 397
Target Start/End: Original strand, 44368388 - 44368438
Alignment:
| Q |
347 |
gactttatctttttaatacgttttgccttcttttcattacaaaaaagaagg |
397 |
Q |
| |
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|||||||||||||||| | ||||||||||| |||||| || |||||||||| |
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| T |
44368388 |
gactttatctttttaacatgttttgccttcatttcatgacgaaaaagaagg |
44368438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 347 - 397
Target Start/End: Complemental strand, 20239089 - 20239039
Alignment:
| Q |
347 |
gactttatctttttaatacgttttgccttcttttcattacaaaaaagaagg |
397 |
Q |
| |
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|||||||||||||||| | ||||||||||| |||||| || |||||||||| |
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| T |
20239089 |
gactttatctttttaacatgttttgccttcatttcatgacgaaaaagaagg |
20239039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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