View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5453-Insertion-4 (Length: 815)
Name: NF5453-Insertion-4
Description: NF5453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5453-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 15 - 543
Target Start/End: Complemental strand, 16282464 - 16281925
Alignment:
| Q |
15 |
tacttcggacgcaaatgtatagttggttagcaattgacaatattgctctctcaaatgtttgtttgtaaccgggaggttaggccgcttaagtgatttaagt |
114 |
Q |
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| T |
16282464 |
tacttcggacgcaaacgtatagttggttagcaattgacaatattgctctctcaaatgtttgt----aaccaggaggttaggcagcttaagtgatttaagt |
16282369 |
T |
|
| Q |
115 |
taagaattaaaagagttgatgtgatcaacgtttagggtttaagaattgaggagccaaaatttggtctcgggcatttcacaattagtttataattgtttca |
214 |
Q |
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| T |
16282368 |
taagaattaaaagagttgatgcgatcaacgtttagggtttaagaattgaggagccaaaatttggtctcgggcatttcacaattagtttataattgtttca |
16282269 |
T |
|
| Q |
215 |
atgtattatgacctctgcatcatatttcaaaaagtgttatgga-----------------ttgttttttaaagtttcttgattacatgcgtactcctatt |
297 |
Q |
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| T |
16282268 |
atgtattatgacctctacatcatatttcgaaaagtgttatggattatttctgtttagtatttgttttttaaagtttcttgattacatgcgtactcctatt |
16282169 |
T |
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| Q |
298 |
tgttttttcttgattacatgattttgttttaaggaaagaaagtttctttgatggatttacgcttttattgttttaaacgaacaagcacaaaaagttttca |
397 |
Q |
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| T |
16282168 |
tgttttttcttgattacat-atttttttttaaggaaagaaagtttctttgatggatttacgcttttattgttttaaacga--aagcacaaaaagttttca |
16282072 |
T |
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| Q |
398 |
taataatgtatggattaacgatgaagaaaataacgtggaatctccctcttatatgttgtagtggctcttgataaaatgccactatttgtttaa-nnnnnn |
496 |
Q |
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| T |
16282071 |
aaataatgtatggattaacgatgaagaaaatagcgtggaatctccctcttatatgttgtcgtggctcttgataaaatgccattatttgtttaattttttt |
16281972 |
T |
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| Q |
497 |
nngaatcggaccactatttgtttaatgaaatatcagtctactgcaac |
543 |
Q |
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| T |
16281971 |
ttgaatcgggccactatttgtttaatgaaatatcagtctactgcaac |
16281925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 610 - 719
Target Start/End: Complemental strand, 16281863 - 16281750
Alignment:
| Q |
610 |
aagatgtttagcagcaaaaatatct---gagtgcgagatatcaattaattatgctcgttttcaaatgaaag-ttttctgtattcccttatacttttgaga |
705 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| |||| | | |||||||| |||||||||| |
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| T |
16281863 |
aagatgtttagcagcaaaaatatctttggagtgcgagatatcaattaattatgctccttttcaaattaaagttttttttttttcccttacacttttgaga |
16281764 |
T |
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| Q |
706 |
cacaagagtcggtc |
719 |
Q |
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| T |
16281763 |
cacaagagtcggtc |
16281750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 759 - 812
Target Start/End: Complemental strand, 16281665 - 16281612
Alignment:
| Q |
759 |
aactaccataagtaatagggacgtcacatcttaacttaaaatcctaatatatta |
812 |
Q |
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| T |
16281665 |
aactaacataagtaatagggacatcacatcttaacttaaaatcctaatatatta |
16281612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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