View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5453-Insertion-6 (Length: 677)
Name: NF5453-Insertion-6
Description: NF5453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5453-Insertion-6 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 530; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 8 - 677
Target Start/End: Complemental strand, 35408911 - 35408235
Alignment:
| Q |
8 |
gaacacacaaacattttgcacaacactttttgcagaagaacaaacacggcttcttgtgagaagtctttgaacatcgatgatcacaagcatgaccacattc |
107 |
Q |
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| T |
35408911 |
gaacacacaaacattttgcacaacactttttgcagaagaacaaacacggcttcttgtgagaagtctttgaacatcgatgatcacaagcatgaccacattc |
35408812 |
T |
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| Q |
108 |
tgcaaaatgtaattaaatcatattattaatattttgtcaggttttcctttaattataagatgcgaagagtttagaattttattnnnnnnnnttaataata |
207 |
Q |
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| T |
35408811 |
tgcaaaatgtaattaaatcatattattaatattttgtcaggttttcctttaattataagatgcgaagagtttggaattttattaaaaaaaattaataata |
35408712 |
T |
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| Q |
208 |
atgttttaactattaccgtttggacgaagtgatctctcaccaccagcctgtggatttttatttcaccaaaaaataatcagtaaacagaattaatcaagca |
307 |
Q |
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| T |
35408711 |
atgttttaactattaccgtttggacgaagtgatctctcaccaccagcctgtggatttttatttcaccaaaaaataatcagtaaacagaattaatcaagca |
35408612 |
T |
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| Q |
308 |
tcagattaaatcaaaactcaaaaaggtgactgtacgcgtaaatgcagtatagtatcactagttttataattgttttttaagtgatcttcatcactgtag- |
406 |
Q |
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| T |
35408611 |
tcagattaaatcaaaactcaaaagggtgactgta--cgtaaatgcagtctagtatcactagttttataattgttttttaagtgatcttcatcactgtagc |
35408514 |
T |
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| Q |
407 |
-------caaacaaacaaacaaacaatttaacagaaaattctacttc-nnnnnnnnttgaaatttaatgtctaatctaatcattttgtttttatacatgt |
498 |
Q |
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| T |
35408513 |
aaacaaacaaacaaacaaacaaacaatttaacagaaaattctacttcaaaaaaaaattgaaatttaatgtctaatctaatcattttgtttttatacatgt |
35408414 |
T |
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| Q |
499 |
aaggctgacgaatatgaagtaaggnnnnnnngagaaaactcacagaaacaatctcgatcacaaaagccagagcgaggacgaaaataatggtatccttgag |
598 |
Q |
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| T |
35408413 |
aagggtgacgaatatgaagcaaggaaacaaagagaaaactcacagaaacaatcttgattacaaaagccagagcgaggacgaaaataatggtatccttgag |
35408314 |
T |
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| Q |
599 |
atataaaattttagccattgaagtcttgtttgatatatccttcaacctctacaaatgaagatgaagatgactagtattc |
677 |
Q |
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| T |
35408313 |
atataaaattttagccattgaagtcttgtttgatatatccttcagcctctacaaatgaagatgaagatgactagtattc |
35408235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 616
Target Start/End: Original strand, 20873267 - 20873353
Alignment:
| Q |
530 |
gagaaaactcacagaaacaatctcgatcacaaaagccagagcgaggacgaaaataatggtatccttgagatataaaattttagccat |
616 |
Q |
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| T |
20873267 |
gagaaaactcacagagacaaattggatcacaatagccatggcaaggatgaaagtaatggcatctctgagatatacaattttagccat |
20873353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 20872159 - 20872207
Alignment:
| Q |
69 |
agtctttgaacatcgatgatcacaagcatgaccacattctgcaaaatgt |
117 |
Q |
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| T |
20872159 |
agtctctgaacatcgataatcacatgcagcaccacattctgcaaaatgt |
20872207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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