View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5453-Insertion-7 (Length: 545)

Name: NF5453-Insertion-7
Description: NF5453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5453-Insertion-7
NF5453-Insertion-7
[»] chr7 (11 HSPs)
chr7 (99-543)||(33326505-33326941)
chr7 (465-545)||(33882000-33882080)
chr7 (465-536)||(958102-958173)
chr7 (465-538)||(31386983-31387056)
chr7 (461-527)||(37503835-37503902)
chr7 (461-518)||(36655618-36655675)
chr7 (452-516)||(32443971-32444035)
chr7 (476-545)||(44238097-44238166)
chr7 (459-523)||(42710602-42710666)
chr7 (450-526)||(44484102-44484179)
chr7 (463-545)||(42988251-42988332)
[»] chr3 (17 HSPs)
chr3 (8-98)||(53344017-53344107)
chr3 (8-98)||(47809071-47809161)
chr3 (437-538)||(50345867-50345969)
chr3 (477-545)||(35539064-35539132)
chr3 (461-539)||(7885901-7885979)
chr3 (459-541)||(21079879-21079960)
chr3 (461-538)||(50596068-50596146)
chr3 (461-524)||(53143486-53143550)
chr3 (465-522)||(24744520-24744578)
chr3 (461-524)||(48457866-48457930)
chr3 (450-530)||(17378660-17378741)
chr3 (362-423)||(17378763-17378824)
chr3 (465-545)||(25926484-25926564)
chr3 (362-407)||(25926615-25926660)
chr3 (476-545)||(31720247-31720316)
chr3 (62-98)||(47808362-47808398)
chr3 (62-98)||(53344753-53344789)
[»] chr2 (7 HSPs)
chr2 (364-545)||(11512013-11512191)
chr2 (461-524)||(39445799-39445862)
chr2 (461-545)||(20683291-20683376)
chr2 (58-100)||(2656492-2656534)
chr2 (62-99)||(44987551-44987588)
chr2 (58-98)||(24394893-24394933)
chr2 (58-106)||(44986804-44986852)
[»] chr8 (6 HSPs)
chr8 (476-538)||(41123232-41123294)
chr8 (459-535)||(7573190-7573267)
chr8 (465-545)||(34717691-34717772)
chr8 (465-545)||(18806934-18807014)
chr8 (461-515)||(33574614-33574668)
chr8 (481-522)||(3348086-3348127)
[»] chr5 (13 HSPs)
chr5 (476-545)||(40976362-40976431)
chr5 (467-545)||(26148818-26148896)
chr5 (473-538)||(8681453-8681518)
chr5 (461-539)||(36974234-36974310)
chr5 (476-545)||(13417352-13417421)
chr5 (362-407)||(38956665-38956710)
chr5 (492-545)||(38956773-38956826)
chr5 (461-520)||(4942534-4942594)
chr5 (461-524)||(5367647-5367711)
chr5 (461-524)||(15558529-15558593)
chr5 (476-544)||(25768115-25768183)
chr5 (362-407)||(13417487-13417532)
chr5 (459-518)||(13906093-13906153)
[»] chr4 (11 HSPs)
chr4 (461-538)||(26417157-26417234)
chr4 (461-538)||(54998091-54998168)
chr4 (473-535)||(34483619-34483681)
chr4 (461-545)||(258356-258441)
chr4 (461-524)||(45047235-45047298)
chr4 (476-545)||(37274877-37274946)
chr4 (461-544)||(8757329-8757411)
chr4 (362-407)||(34483723-34483768)
chr4 (362-407)||(36218936-36218981)
chr4 (58-98)||(18362935-18362975)
chr4 (58-98)||(36599951-36599991)
[»] chr1 (13 HSPs)
chr1 (461-538)||(51244187-51244265)
chr1 (461-539)||(7712318-7712396)
chr1 (473-544)||(42488950-42489021)
chr1 (461-522)||(33780659-33780721)
chr1 (461-545)||(5827478-5827563)
chr1 (450-530)||(35615604-35615685)
chr1 (461-545)||(3582266-3582350)
chr1 (461-522)||(42400954-42401016)
chr1 (362-407)||(1774759-1774804)
chr1 (481-530)||(30335842-30335891)
chr1 (461-522)||(37583159-37583220)
chr1 (8-77)||(46254332-46254401)
chr1 (464-539)||(5041060-5041135)
[»] chr6 (3 HSPs)
chr6 (461-524)||(24141324-24141388)
chr6 (481-524)||(11703285-11703328)
chr6 (450-539)||(33099602-33099691)
[»] scaffold0067 (1 HSPs)
scaffold0067 (479-524)||(226-271)


Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-162; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 99 - 543
Target Start/End: Complemental strand, 33326941 - 33326505
Alignment:
Q  99 cttaaaattatggagattttacaattaaaaacaaaaataaagaatatttttgtcgagaaaatataaaagtattttagcaatcgctgtcatttatttataa 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33326941 cttaaaattatggagattttacaattaaaaacaaaaataaagaatatttttgtcgagaaaatataaaagtattttagcaatcgctgtcatttatttataa 33326842  T
Q  199 tttgcaatcatatcaccggtattaatgcattagaactttgtaattagacgtatttgagaatagtattaagatgaattactttttaacaagtccttctttt 298  Q
    | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||    
T  33326841 tgtgcaatcatatcaccggtattaatgcataagaactttgtaattagacgtatttgagaatagtattaagatgaatgactttataacaagtccttgtttt 33326742  T
Q  299 acacctcatccatccctatcttgttaaaaagttgtgattttatttattattgnnnnnnnngag-atccacgttgg-tagagtctttaccttttaagatcc 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||           ||| ||| || |||| |||||| |||| ||||||||||||    
T  33326741 acacctcatccatccctatcttgttaaaaagttgtgattttatttatta----------agagcatctacattggttagagtttttatcttttaagatcc 33326652  T
Q  397 ggtacctaataagtagccacaatgtgaaagnnnnnnnnntttgggggtcaatgaagacctaagatctcacttaagacctcaatcttaagtggattccaca 496  Q
    ||||| ||||| ||||||||||| || |||          |||||| || | ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33326651 ggtacttaataggtagccacaatatggaagaaaaaaaaaattggggatctacgaagatctaagatctcacttaagacctcaatcttaagtggattccaca 33326552  T
Q  497 caacttttcattaaaataatcattgtttgagttgattttgttgtttt 543  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  33326551 caacttttcattaaaataatcattgtttgagttgattttattgtttt 33326505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 465 - 545
Target Start/End: Original strand, 33882000 - 33882080
Alignment:
Q  465 acttaagacctcaatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttgtttttc 545  Q
    |||||||||| |||| |||||||||| |||||| | |||||| ||||||||||||| ||||| ||| ||||||||||||||    
T  33882000 acttaagaccccaattttaagtggatcccacaccatttttcaataaaataatcattatttgaattgcttttgttgtttttc 33882080  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 465 - 536
Target Start/End: Complemental strand, 958173 - 958102
Alignment:
Q  465 acttaagacctcaatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttg 536  Q
    |||||||||| ||||||||||||||   |||||||||||||| ||||||||||||||||||| ||| |||||    
T  958173 acttaagaccccaatcttaagtggaccacacacaacttttcaataaaataatcattgtttgaattgcttttg 958102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 465 - 538
Target Start/End: Complemental strand, 31387056 - 31386983
Alignment:
Q  465 acttaagacctcaatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgtt 538  Q
    ||||||||||  ||||||||||||   ||||||||||||||| ||||||||||||||||||| ||| |||||||    
T  31387056 acttaagaccctaatcttaagtgggggccacacaacttttcaataaaataatcattgtttgaattgtttttgtt 31386983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 461 - 527
Target Start/End: Original strand, 37503835 - 37503902
Alignment:
Q  461 tctcacttaagacctc-aatcttaagtggattccacacaacttttcattaaaataatcattgtttgag 527  Q
    |||||||||||||| | |||||||||||||| |||||| |||||||| ||||||||||||| ||||||    
T  37503835 tctcacttaagacccccaatcttaagtggatcccacaccacttttcaataaaataatcattatttgag 37503902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 461 - 518
Target Start/End: Original strand, 36655618 - 36655675
Alignment:
Q  461 tctcacttaagacctcaatcttaagtggattccacacaacttttcattaaaataatca 518  Q
    |||||||||||||||||  |||||||||||||||||  |||||| |||||||||||||    
T  36655618 tctcacttaagacctcatgcttaagtggattccacattacttttgattaaaataatca 36655675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 452 - 516
Target Start/End: Complemental strand, 32444035 - 32443971
Alignment:
Q  452 gacctaagatctcacttaagacctcaatcttaagtggattccacacaacttttcattaaaataat 516  Q
    ||||||| |||| |||||||||| |||||||||||||   ||||||||||||||| |||||||||    
T  32444035 gacctaaaatcttacttaagaccccaatcttaagtggcccccacacaacttttcaataaaataat 32443971  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 476 - 545
Target Start/End: Complemental strand, 44238166 - 44238097
Alignment:
Q  476 caatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttgtttttc 545  Q
    |||||||||||||||  ||||  | |||||| ||||||||||||| ||||||||| |||| |||||||||    
T  44238166 caatcttaagtggatcgcacatcatttttcaataaaataatcattatttgagttgtttttattgtttttc 44238097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 523
Target Start/End: Complemental strand, 42710666 - 42710602
Alignment:
Q  459 gatctcacttaagacctcaatcttaagtggattccacacaacttttcattaaaataatcattgtt 523  Q
    |||||||||||||||  || ||||||||| |  ||||||||||||| | ||||||||||||||||    
T  42710666 gatctcacttaagactccattcttaagtgaaccccacacaactttttaataaaataatcattgtt 42710602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 526
Target Start/End: Complemental strand, 44484179 - 44484102
Alignment:
Q  450 aagacctaagatctcacttaagacctcaa-tcttaagtggattccacacaacttttcattaaaataatcattgtttga 526  Q
    |||||| ||| ||| |||||||||| | | |||||||||||| |||||| |||||||| ||||||||| ||| |||||    
T  44484179 aagacccaaggtctaacttaagacccccagtcttaagtggatcccacaccacttttcaataaaataattattatttga 44484102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 545
Target Start/End: Original strand, 42988251 - 42988332
Alignment:
Q  463 tcacttaagacctcaatcttaagtggattc-cacacaacttttcattaaaataatcattgtttgagttgattttgttgtttttc 545  Q
    |||||||||||  ||||||||||||  ||| ||||| |||||| | ||||||||| ||| ||||||||| |||||||| |||||    
T  42988251 tcacttaagactccaatcttaagtg--ttctcacactactttttactaaaataattattatttgagttgtttttgttgcttttc 42988332  T

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Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 53344107 - 53344017
Alignment:
Q  8 aacaaatctaatccgctcattaaatctaacagcgttttttacgtctttctccgatgagagacttgattgatccctcactctagaatccacc 98  Q
    |||||||||||||||||||||||||||||| ||| |||||||||  | | ||| |||| ||||||||||||||||||  ||||||||||||    
T  53344107 aacaaatctaatccgctcattaaatctaacggcgctttttacgttctccaccggtgagggacttgattgatccctcatcctagaatccacc 53344017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 47809071 - 47809161
Alignment:
Q  8 aacaaatctaatccgctcattaaatctaacagcgttttttacgtctttctccgatgagagacttgattgatccctcactctagaatccacc 98  Q
    |||||||| ||||||||||||||||| |||  || |||||||||| | | ||| |||| ||||||||||||||||||| | ||||||||||    
T  47809071 aacaaatccaatccgctcattaaatccaacgacgctttttacgtcctccaccggtgagggacttgattgatccctcaccccagaatccacc 47809161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 437 - 538
Target Start/End: Original strand, 50345867 - 50345969
Alignment:
Q  437 ttgggggtcaatgaagacctaagatctcacttaagacctc-aatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgatttt 535  Q
    |||||||||  | |||||| | |||||||||||||||||| ||||||||||||   |||||| |||||| | ||||||||||||| ||||||||| ||||    
T  50345867 ttgggggtctcttaagaccgatgatctcacttaagacctccaatcttaagtggtccccacaccactttttaataaaataatcattatttgagttgttttt 50345966  T
Q  536 gtt 538  Q
    |||    
T  50345967 gtt 50345969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 477 - 545
Target Start/End: Complemental strand, 35539132 - 35539064
Alignment:
Q  477 aatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttgtttttc 545  Q
    |||||||||||||  |||||| |||||| | ||||||||||||| ||||||||| ||||||||||||||    
T  35539132 aatcttaagtggaccccacaccacttttaaataaaataatcattatttgagttgtttttgttgtttttc 35539064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 461 - 539
Target Start/End: Original strand, 7885901 - 7885979
Alignment:
Q  461 tctcacttaagacctcaat-cttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttg 539  Q
    |||||||||||||||| || ||||||||||| ||||||||||||| | ||||||||| |||| |||||||| ||||||||    
T  7885901 tctcacttaagacctccattcttaagtggatcccacacaactttttaataaaataataattg-ttgagttgcttttgttg 7885979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 459 - 541
Target Start/End: Original strand, 21079879 - 21079960
Alignment:
Q  459 gatctcacttaagacctcaa-tcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttgtt 541  Q
    |||||||||||||||  ||| |||||||||||| |||||| |||||||| ||||||||||||| ||||||||| ||||||||||    
T  21079879 gatctcacttaagacaccaaatcttaagtggat-ccacaccacttttcaataaaataatcatt-tttgagttgtttttgttgtt 21079960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 461 - 538
Target Start/End: Original strand, 50596068 - 50596146
Alignment:
Q  461 tctcacttaagacct-caatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgtt 538  Q
    |||| |||||||||| ||||||||||||||  | |||| |||||||| ||||||||||||| ||||||||| |||||||    
T  50596068 tctcgcttaagaccttcaatcttaagtggaccctacaccacttttcaataaaataatcattatttgagttgcttttgtt 50596146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 461 - 524
Target Start/End: Original strand, 53143486 - 53143550
Alignment:
Q  461 tctcacttaa-gacctcaatcttaagtggattccacacaacttttcattaaaataatcattgttt 524  Q
    |||||||||| ||||||| |||||||||||| ||||||||||||| | ||||||||| |||||||    
T  53143486 tctcacttaaagacctcattcttaagtggatcccacacaactttttaataaaataattattgttt 53143550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 522
Target Start/End: Complemental strand, 24744578 - 24744520
Alignment:
Q  465 acttaagacctcaat-cttaagtggattccacacaacttttcattaaaataatcattgt 522  Q
    |||||||||||| || ||||||||||| |||||| |||||| |||||||||||||||||    
T  24744578 acttaagacctccattcttaagtggatcccacactactttttattaaaataatcattgt 24744520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 524
Target Start/End: Original strand, 48457866 - 48457930
Alignment:
Q  461 tctcacttaagacct-caatcttaagtggattccacacaacttttcattaaaataatcattgttt 524  Q
    ||||||||||||||| || ||||||||||||  |||||||||||| | |||| ||||||||||||    
T  48457866 tctcacttaagaccttcattcttaagtggatctcacacaactttttaataaactaatcattgttt 48457930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 530
Target Start/End: Complemental strand, 17378741 - 17378660
Alignment:
Q  450 aagacctaagatctcacttaagacctcaat-cttaagtggattccacacaacttttcattaaaataatcattgtttgagttg 530  Q
    |||||| | |||||||||||||||||| || ||||||| ||  |||||  |||||| | ||||||||||||| |||||||||    
T  17378741 aagacccatgatctcacttaagacctccattcttaagtagaccccacatcacttttaaataaaataatcattatttgagttg 17378660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 423
Target Start/End: Complemental strand, 17378824 - 17378763
Alignment:
Q  362 atccacgttggtagagtctttaccttttaagatccggtacctaataagtagccacaatgtga 423  Q
    |||||| ||||||| ||||||||| ||||| | ||||||||||||| ||| || ||||||||    
T  17378824 atccacattggtagggtctttaccatttaaaacccggtacctaataggtatccccaatgtga 17378763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 545
Target Start/End: Complemental strand, 25926564 - 25926484
Alignment:
Q  465 acttaagacctcaa-tcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttgtttttc 545  Q
    |||||||||| ||| |||||||||||  |||||| |||||||| |||| |||||||| ||||||||  |||||||| |||||    
T  25926564 acttaagaccccaaatcttaagtggaccccacaccacttttcaataaa-taatcattatttgagttatttttgttgcttttc 25926484  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 25926660 - 25926615
Alignment:
Q  362 atccacgttggtagagtctttaccttttaagatccggtacctaata 407  Q
    |||||| ||||||||||||||||| ||||| | |||||||||||||    
T  25926660 atccacattggtagagtctttaccatttaaaacccggtacctaata 25926615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 545
Target Start/End: Complemental strand, 31720316 - 31720247
Alignment:
Q  476 caatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttgtttttc 545  Q
    ||||||||||||||  |||||| |||||| | ||||||||||||| ||||| ||  |||||||| |||||    
T  31720316 caatcttaagtggaccccacaccactttttaataaaataatcattatttgaatttcttttgttgcttttc 31720247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 47808398 - 47808362
Alignment:
Q  62 tgagagacttgattgatccctcactctagaatccacc 98  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  47808398 tgagggacttgattgatccctcaccctagaatccacc 47808362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 53344753 - 53344789
Alignment:
Q  62 tgagagacttgattgatccctcactctagaatccacc 98  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  53344753 tgagggacttgattgatccctcaccctagaatccacc 53344789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 364 - 545
Target Start/End: Complemental strand, 11512191 - 11512013
Alignment:
Q  364 ccacgttggtagagtctttaccttttaagatccggtacctaataagtagccacaatgtgaaagnnnnnnnnntttgggggtcaatgaagacctaagatct 463  Q
    |||| ||||||| ||||||||| ||||||| ||||||||||||| ||| || ||||||| ||          ||||||||||  | |||||| | | |||    
T  11512191 ccacattggtagggtctttaccatttaagacccggtacctaataggtacccccaatgtggaa----aaaaattttgggggtctcttaagacccagggtct 11512096  T
Q  464 cacttaagacctc-aatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttgtttttc 545  Q
     |||||||||| | |||||||||||||  |||||| |||||||| ||||||||||||||||| | ||| ||||||||||||||    
T  11512095 aacttaagacccccaatcttaagtggaccccacaccacttttcaataaaataatcattgtttaaattgtttttgttgtttttc 11512013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 461 - 524
Target Start/End: Original strand, 39445799 - 39445862
Alignment:
Q  461 tctcacttaagacctcaatcttaagtggattccacacaacttttcattaaaataatcattgttt 524  Q
    |||||||||||||| || |||||||||||  ||||||||||||| | |||||||||||||||||    
T  39445799 tctcacttaagaccccattcttaagtggaccccacacaactttttaataaaataatcattgttt 39445862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 461 - 545
Target Start/End: Original strand, 20683291 - 20683376
Alignment:
Q  461 tctcacttaagacctc-aatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttgtttttc 545  Q
    |||||||||||||| | |||||||||| ||  |||||| ||||||||  |||||||||||| ||||||||| |||||||| |||||    
T  20683291 tctcacttaagacccctaatcttaagtagaccccacaccacttttcaaaaaaataatcattatttgagttgcttttgttgattttc 20683376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 2656492 - 2656534
Alignment:
Q  58 ccgatgagagacttgattgatccctcactctagaatccaccct 100  Q
    |||||||| |||||||| || ||||||||||||||||||||||    
T  2656492 ccgatgagggacttgatagagccctcactctagaatccaccct 2656534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 44987551 - 44987588
Alignment:
Q  62 tgagagacttgattgatccctcactctagaatccaccc 99  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  44987551 tgagagacttaattgatccctcaccctagaatccaccc 44987588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 24394893 - 24394933
Alignment:
Q  58 ccgatgagagacttgattgatccctcactctagaatccacc 98  Q
    |||||||| ||||| ||||||||| ||||||||||||||||    
T  24394893 ccgatgagggacttaattgatcccccactctagaatccacc 24394933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 44986852 - 44986804
Alignment:
Q  58 ccgatgagagacttgattgatccctcactctagaatccacccttaaaat 106  Q
    |||||||| ||||| ||||||||||||| ||||||| ||||| ||||||    
T  44986852 ccgatgagggacttaattgatccctcaccctagaattcacccataaaat 44986804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 476 - 538
Target Start/End: Original strand, 41123232 - 41123294
Alignment:
Q  476 caatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgtt 538  Q
    |||||||||||||| ||||||| |||||||| ||||||||||||| |||||||||||||||||    
T  41123232 caatcttaagtggactccacaccacttttcaataaaataatcattatttgagttgattttgtt 41123294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 459 - 535
Target Start/End: Complemental strand, 7573267 - 7573190
Alignment:
Q  459 gatctcacttaagacctc-aatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgatttt 535  Q
    ||||| |||||||||| | |||||||||||||  |||||| |||||||| ||||||||||||| ||||||||| ||||    
T  7573267 gatcttacttaagacccccaatcttaagtggaccccacactacttttcaataaaataatcattatttgagttgctttt 7573190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 465 - 545
Target Start/End: Original strand, 34717691 - 34717772
Alignment:
Q  465 acttaagacc-tcaatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttgtttttc 545  Q
    |||||||||| | ||||||||||||| ||||||| ||||| || |||||||||  || ||||||||| |||||||| |||||    
T  34717691 acttaagaccctaaatcttaagtggactccacaccactttacaataaaataattcttatttgagttgtttttgttgcttttc 34717772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 545
Target Start/End: Original strand, 18806934 - 18807014
Alignment:
Q  465 acttaagacctcaatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttgtttttc 545  Q
    ||||||||||  |||||||||||||  ||| || |||||||| ||||||||| ||| ||||||||| |||| || ||||||    
T  18806934 acttaagaccctaatcttaagtggaccccataccacttttcaataaaataattattatttgagttgtttttcttatttttc 18807014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Original strand, 33574614 - 33574668
Alignment:
Q  461 tctcacttaagacctcaatcttaagtggattccacacaacttttcattaaaataa 515  Q
    ||||||||||||||||||| |||||||||  | |||| |||||||| ||||||||    
T  33574614 tctcacttaagacctcaatattaagtggaccctacaccacttttcaataaaataa 33574668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 522
Target Start/End: Original strand, 3348086 - 3348127
Alignment:
Q  481 ttaagtggattccacacaacttttcattaaaataatcattgt 522  Q
    ||||||||||||||| | |||||| |||||||||||||||||    
T  3348086 ttaagtggattccacgctactttttattaaaataatcattgt 3348127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 476 - 545
Target Start/End: Original strand, 40976362 - 40976431
Alignment:
Q  476 caatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttgtttttc 545  Q
    ||||||||||||||  |||||| |||||||| ||||||||||||| ||||||||| ||||||||||||||    
T  40976362 caatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgttgtttttc 40976431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 467 - 545
Target Start/End: Original strand, 26148818 - 26148896
Alignment:
Q  467 ttaagacctcaatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttgtttttc 545  Q
    |||||| | ||||||||||||||  |||||| |||||||| ||||||||| ||| ||||||||| |||||||| |||||    
T  26148818 ttaagatcccaatcttaagtggaccccacaccacttttcaataaaataataattatttgagttgtttttgttgcttttc 26148896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 473 - 538
Target Start/End: Complemental strand, 8681518 - 8681453
Alignment:
Q  473 cctcaatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgtt 538  Q
    |||||||||||||||||  |||||| | |||||| ||||||||||||| ||||||||| |||||||    
T  8681518 cctcaatcttaagtggaccccacaccatttttcaataaaataatcattatttgagttgtttttgtt 8681453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 539
Target Start/End: Complemental strand, 36974310 - 36974234
Alignment:
Q  461 tctcacttaagacctcaatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttg 539  Q
    |||||||||||||| || ||||||||| || |||||| |||||| ||||||||||| |||| |||||||| ||||||||    
T  36974310 tctcacttaagaccccattcttaagtg-atcccacaccactttttattaaaataataattg-ttgagttgcttttgttg 36974234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 476 - 545
Target Start/End: Complemental strand, 13417421 - 13417352
Alignment:
Q  476 caatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttgtttttc 545  Q
    |||| |||||||||  |||||| |||||||| ||||||||||||| ||||| ||||||| |||| |||||    
T  13417421 caatgttaagtggaccccacaccacttttcaataaaataatcattatttgaattgatttggttgcttttc 13417352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 38956665 - 38956710
Alignment:
Q  362 atccacgttggtagagtctttaccttttaagatccggtacctaata 407  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||    
T  38956665 atccacattggtagggtctttaccatttaagatccggtacctaata 38956710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 492 - 545
Target Start/End: Original strand, 38956773 - 38956826
Alignment:
Q  492 ccacacaacttttcattaaaataatcattgtttgagttgattttgttgtttttc 545  Q
    |||||| |||||||| ||||||||||||| ||||||||| |||||||| |||||    
T  38956773 ccacaccacttttcaataaaataatcattatttgagttgtttttgttgcttttc 38956826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 520
Target Start/End: Complemental strand, 4942594 - 4942534
Alignment:
Q  461 tctcacttaagacc-tcaatcttaagtggattccacacaacttttcattaaaataatcatt 520  Q
    |||||||||||||| ||| |||||||||||  ||||||||||||| | |||||||||||||    
T  4942594 tctcacttaagaccctcattcttaagtggaccccacacaactttttaataaaataatcatt 4942534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 524
Target Start/End: Original strand, 5367647 - 5367711
Alignment:
Q  461 tctcacttaagacctcaat-cttaagtggattccacacaacttttcattaaaataatcattgttt 524  Q
    ||||| |||||||||| || |||||||| |||| ||||||||||| | |||||||||||||||||    
T  5367647 tctcaattaagacctctattcttaagtgaattctacacaactttttaataaaataatcattgttt 5367711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 524
Target Start/End: Original strand, 15558529 - 15558593
Alignment:
Q  461 tctcacttaagacct-caatcttaagtggattccacacaacttttcattaaaataatcattgttt 524  Q
    ||||||||||||||| || | |||| ||||| ||||||||||||| | |||||||||||||||||    
T  15558529 tctcacttaagaccttcatttttaaatggatcccacacaactttttaataaaataatcattgttt 15558593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 544
Target Start/End: Original strand, 25768115 - 25768183
Alignment:
Q  476 caatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttgttttt 544  Q
    ||||||||||||||  |||||| |||||||| ||||||||| ||| ||||| ||| ||||||| |||||    
T  25768115 caatcttaagtggaccccacaccacttttcaataaaataattattatttgaattgtttttgttattttt 25768183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 13417532 - 13417487
Alignment:
Q  362 atccacgttggtagagtctttaccttttaagatccggtacctaata 407  Q
    |||||| | ||||| ||||||||| |||||||||||||||||||||    
T  13417532 atccacatcggtagggtctttaccatttaagatccggtacctaata 13417487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 518
Target Start/End: Complemental strand, 13906153 - 13906093
Alignment:
Q  459 gatctcacttaagacctcaat-cttaagtggattccacacaacttttcattaaaataatca 518  Q
    ||||||||||||||||||||| ||||||||||  |||||  ||||||  ||||||||||||    
T  13906153 gatctcacttaagacctcaatgcttaagtggaccccacattacttttgcttaaaataatca 13906093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 461 - 538
Target Start/End: Original strand, 26417157 - 26417234
Alignment:
Q  461 tctcacttaagacctcaatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgtt 538  Q
    |||||||||||||| |||||||||||| |  |||||| |||||||| ||||||||||||| ||||||||| |||||||    
T  26417157 tctcacttaagaccccaatcttaagtgaaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 26417234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 461 - 538
Target Start/End: Original strand, 54998091 - 54998168
Alignment:
Q  461 tctcacttaagacctcaatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgtt 538  Q
    ||||||||||||||| |||||||||||||  |||||| | |||||| ||||||||||||| ||||||||| |||||||    
T  54998091 tctcacttaagaccttaatcttaagtggaacccacaccaattttcaataaaataatcattatttgagttgtttttgtt 54998168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 473 - 535
Target Start/End: Complemental strand, 34483681 - 34483619
Alignment:
Q  473 cctcaatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgatttt 535  Q
    |||||||||||||||||  |||||| |||||||| ||||||||||||| ||||||||| ||||    
T  34483681 cctcaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgttttt 34483619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 461 - 545
Target Start/End: Complemental strand, 258441 - 258356
Alignment:
Q  461 tctcacttaagacc-tcaatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttgtttttc 545  Q
    |||| ||||||||| |||||||||||||||| ||||| || |||||| ||||||||| ||| ||||||||  |||||||| |||||    
T  258441 tctcgcttaagaccctcaatcttaagtggatcccacaaaatttttcaataaaataattattatttgagttacttttgttgcttttc 258356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 461 - 524
Target Start/End: Complemental strand, 45047298 - 45047235
Alignment:
Q  461 tctcacttaagacctcaatcttaagtggattccacacaacttttcattaaaataatcattgttt 524  Q
    ||||||||||||||||| ||||||||||   ||||||||| ||| | |||||||||||||||||    
T  45047298 tctcacttaagacctcattcttaagtgggccccacacaacattttaataaaataatcattgttt 45047235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 476 - 545
Target Start/End: Complemental strand, 37274946 - 37274877
Alignment:
Q  476 caatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttgtttttc 545  Q
    ||||||||||||||| |||||  |||||||| ||||||||||||| ||||| ||| || ||||| |||||    
T  37274946 caatcttaagtggatcccacatcacttttcaataaaataatcattatttgaattgtttatgttgcttttc 37274877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 544
Target Start/End: Original strand, 8757329 - 8757411
Alignment:
Q  461 tctcacttaagacctcaatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttgttttt 544  Q
    ||||||||||||||||| |||||| || ||  ||||| |||||| | |||||||||||||| || ||||| |||||||| ||||    
T  8757329 tctcacttaagacctcattcttaactgaatctcacaccactttttaataaaataatcattggtt-agttgtttttgttgatttt 8757411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 34483768 - 34483723
Alignment:
Q  362 atccacgttggtagagtctttaccttttaagatccggtacctaata 407  Q
    |||||| ||| ||||||||||||| |||||||||| ||||||||||    
T  34483768 atccacattgatagagtctttaccatttaagatccagtacctaata 34483723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 36218936 - 36218981
Alignment:
Q  362 atccacgttggtagagtctttaccttttaagatccggtacctaata 407  Q
    |||||| ||||||| ||||||||| |||||||| ||||||||||||    
T  36218936 atccacattggtagggtctttaccatttaagattcggtacctaata 36218981  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 18362975 - 18362935
Alignment:
Q  58 ccgatgagagacttgattgatccctcactctagaatccacc 98  Q
    ||||||| |||||| ||||||||||||| ||||||||||||    
T  18362975 ccgatgaaagacttaattgatccctcaccctagaatccacc 18362935  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 36599951 - 36599991
Alignment:
Q  58 ccgatgagagacttgattgatccctcactctagaatccacc 98  Q
    ||||||| |||||| ||||||||||||| ||||||||||||    
T  36599951 ccgatgaaagacttaattgatccctcaccctagaatccacc 36599991  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 461 - 538
Target Start/End: Complemental strand, 51244265 - 51244187
Alignment:
Q  461 tctcacttaaga-cctcaatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgtt 538  Q
    |||||||||||| |||||||||||||||||  |||||| |||||||| ||||||||||||| ||||| ||| |||||||    
T  51244265 tctcacttaagatcctcaatcttaagtggaccccacaccacttttcaataaaataatcattatttgaattgtttttgtt 51244187  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 461 - 539
Target Start/End: Complemental strand, 7712396 - 7712318
Alignment:
Q  461 tctcacttaagacctcaat-cttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttg 539  Q
    |||||||||||||| |||| |||||||||| |||||||||||||| | |||||||||||||  |||||||| ||||||||    
T  7712396 tctcacttaagaccccaattcttaagtggactccacacaacttttaaataaaataatcatt-attgagttgtttttgttg 7712318  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 473 - 544
Target Start/End: Original strand, 42488950 - 42489021
Alignment:
Q  473 cctcaatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttgttttt 544  Q
    ||||||||||||||| |  |||||| |||||||| ||||||||||||| ||||||||| |||||||| ||||    
T  42488950 cctcaatcttaagtgaaccccacaccacttttcaataaaataatcattatttgagttgcttttgttgctttt 42489021  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 461 - 522
Target Start/End: Complemental strand, 33780721 - 33780659
Alignment:
Q  461 tctcacttaagacctcaat-cttaagtggattccacacaacttttcattaaaataatcattgt 522  Q
    ||||||||||||| || || |||||||||| ||||||| ||||||||||||||||||||||||    
T  33780721 tctcacttaagacttccattcttaagtggactccacactacttttcattaaaataatcattgt 33780659  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 461 - 545
Target Start/End: Original strand, 5827478 - 5827563
Alignment:
Q  461 tctcacttaagacctcaa-tcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttgtttttc 545  Q
    |||||||||||||| ||| |||||||||||  ||  || |||||||| ||||||||||||| ||||||||| |||| ||| |||||    
T  5827478 tctcacttaagaccccaaatcttaagtggaccccgaaccacttttcaataaaataatcattatttgagttgcttttattgcttttc 5827563  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 530
Target Start/End: Complemental strand, 35615685 - 35615604
Alignment:
Q  450 aagacctaagatctcacttaagacc-tcaatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttg 530  Q
    |||||||| | ||| |||||||||| ||| | |||||||||| |||||| |||||| | ||||||||||||| |||||||||    
T  35615685 aagacctagggtcttacttaagaccctcatttttaagtggatcccacaccacttttaaataaaataatcattatttgagttg 35615604  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 545
Target Start/End: Original strand, 3582266 - 3582350
Alignment:
Q  461 tctcacttaagacctcaatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttgtttttc 545  Q
    |||||| ||||||||||||||||||| ||  |||||  |||||||| ||||||||| ||| ||| ||||| |||| ||| |||||    
T  3582266 tctcacataagacctcaatcttaagtagaccccacatcacttttcaataaaataattattatttaagttgtttttattgcttttc 3582350  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 522
Target Start/End: Original strand, 42400954 - 42401016
Alignment:
Q  461 tctcacttaagacc-tcaatcttaagtggattccacacaacttttcattaaaataatcattgt 522  Q
    |||||||||||||| | | |||||||||||  |||||| |||||| |||||||||||||||||    
T  42400954 tctcacttaagacccttattcttaagtggaccccacactactttttattaaaataatcattgt 42401016  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 1774759 - 1774804
Alignment:
Q  362 atccacgttggtagagtctttaccttttaagatccggtacctaata 407  Q
    |||||| ||||||| |||||||||  ||||||||||||||||||||    
T  1774759 atccacattggtagggtctttaccgattaagatccggtacctaata 1774804  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 530
Target Start/End: Complemental strand, 30335891 - 30335842
Alignment:
Q  481 ttaagtggattccacacaacttttcattaaaataatcattgtttgagttg 530  Q
    |||||||||| |||||| |||||| | ||||||||||||| |||||||||    
T  30335891 ttaagtggatcccacaccacttttaaataaaataatcattatttgagttg 30335842  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 522
Target Start/End: Complemental strand, 37583220 - 37583159
Alignment:
Q  461 tctcacttaagacctcaatcttaagtggattccacacaacttttcattaaaataatcattgt 522  Q
    |||||||||||||| || | |||||||||   ||||| |||||| |||||||||||||||||    
T  37583220 tctcacttaagaccccatttttaagtggacctcacactactttttattaaaataatcattgt 37583159  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 46254332 - 46254401
Alignment:
Q  8 aacaaatctaatccgctcattaaatctaacagcgttttttacgtctttctccgatgagagacttgattga 77  Q
    ||||||| ||||||||||||||||| |||| ||| ||||||| || | | ||| |||| |||||||||||    
T  46254332 aacaaatttaatccgctcattaaatttaacggcgctttttacatcctccaccggtgagggacttgattga 46254401  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 539
Target Start/End: Complemental strand, 5041135 - 5041060
Alignment:
Q  464 cacttaagacctcaat-cttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttg 539  Q
    ||||||||||| |||| |||| |||||| |||| | |||||| | |||||||||||||| |||||||| ||||||||    
T  5041135 cacttaagaccccaattcttacgtggatcccactccactttttaataaaataatcattg-ttgagttgtttttgttg 5041060  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 461 - 524
Target Start/End: Original strand, 24141324 - 24141388
Alignment:
Q  461 tctcacttaagacct-caatcttaagtggattccacacaacttttcattaaaataatcattgttt 524  Q
    ||||||||||||||| || ||||||||||  |||||||||||||| | |||||||||||||||||    
T  24141324 tctcacttaagaccttcattcttaagtggtctccacacaactttttaataaaataatcattgttt 24141388  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 524
Target Start/End: Complemental strand, 11703328 - 11703285
Alignment:
Q  481 ttaagtggattccacacaacttttcattaaaataatcattgttt 524  Q
    |||||||||| ||||||||||||| | |||||||||||||||||    
T  11703328 ttaagtggatcccacacaactttttaataaaataatcattgttt 11703285  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 539
Target Start/End: Complemental strand, 33099691 - 33099602
Alignment:
Q  450 aagacctaagatctcacttaagac-ctcaatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgattttgttg 539  Q
    |||||| | ||||||||||||||| |||| |||||||||||  |||  | | |||| |||||||||||||||| |||||||| ||||||||    
T  33099691 aagaccaatgatctcacttaagacactcattcttaagtggaccccatgccattttttattaaaataatcattg-ttgagttgtttttgttg 33099602  T

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Target: scaffold0067 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 524
Target Start/End: Original strand, 226 - 271
Alignment:
Q  479 tcttaagtggattccacacaacttttcattaaaataatcattgttt 524  Q
    |||||||||||  ||||||||||||| | |||||||||||||||||    
T  226 tcttaagtggaccccacacaactttttaataaaataatcattgttt 271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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