View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5453-Insertion-9 (Length: 527)
Name: NF5453-Insertion-9
Description: NF5453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5453-Insertion-9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 8 - 527
Target Start/End: Original strand, 42674062 - 42674604
Alignment:
| Q |
8 |
aaatgcagccggaacannnnnnnatattgatccggagtatcaacaaacaggactattgggcgtaaaatcagacatatattcattaggtgttatacttcta |
107 |
Q |
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| T |
42674062 |
aaatgcagccggaacatttttttatattgatccggagtatcaacaaacaggactattgggcgtaaaatcagacatatattcattaggtgttatgcttcta |
42674161 |
T |
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| Q |
108 |
caaatcattactggaaagcctccaatgggtgttgctcaccttgttgaggaggccattcagaatgataatcttgcaaaggtgcttgatcggaatgtgactg |
207 |
Q |
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| T |
42674162 |
caaatcattactggaaagactccaatgggtgttgctcaccttgttgaggaggccattcagaatgataatcttgcaaaggtgcttgatccgaatgtgactg |
42674261 |
T |
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| Q |
208 |
attggccggtcgaagaggctttatcacttgctaaattagctttgaagtgttgtgagatgnnnnnnnnggatagaccaagtcttgcttctgtcattttgcc |
307 |
Q |
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| T |
42674262 |
attggccggtcgaagaggctttatcacttgctaaattagctttgaagtgttgtgagatgaaaaaaaaggatagaccaagtcttgcttctgtcattttgcc |
42674361 |
T |
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| Q |
308 |
agaactaaaaagactcagagatctataatatgtatgtatgaatgtatgttatactaa--ctaattagggaaattttcattag------------------ |
387 |
Q |
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| T |
42674362 |
agaactaaaaagactcagagatctataatatgtatgtatgaatgtatgttatactaactctaattagggaaattttcattagttaggttttctttttatt |
42674461 |
T |
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| Q |
388 |
---ttgcttgttattgaaaatgtaaaatagatgaaagccatacattttttatgtttcacacaagttccctccatatggggtggggtagtcctgttcaaat |
484 |
Q |
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| T |
42674462 |
taattgcttgttattgaaaatgtaaaatagatgaaagccatacactttttatgtttcacacaagttccctccatatggggtggggtagtcctgttcaaat |
42674561 |
T |
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| Q |
485 |
gattaatccttcttgtcaacattgtataaaagaggcacacaaa |
527 |
Q |
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| T |
42674562 |
gattaatccttcttgtcaacattgtataaaagaagcacacaaa |
42674604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 6516938 - 6517042
Alignment:
| Q |
33 |
attgatccggagtatcaacaaacaggactattgggcgtaaaatcagacatatattcattaggtgttatacttctacaaatcattactggaaagcctccaa |
132 |
Q |
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| T |
6516938 |
attgatcctgagtatcaacaaactggattattgggtgtgaaatcagatatattttcatttggtatgattttgctacaaattatcactgcaaagcctccaa |
6517037 |
T |
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| Q |
133 |
tgggt |
137 |
Q |
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| T |
6517038 |
tgggt |
6517042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 48235569 - 48235517
Alignment:
| Q |
201 |
gtgactgattggccggtcgaagaggctttatcacttgctaaattagctttgaa |
253 |
Q |
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| T |
48235569 |
gtgactgattggccagttgaagaggctctatcatttgcaaaattagcattgaa |
48235517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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