View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5453_high_1 (Length: 482)

Name: NF5453_high_1
Description: NF5453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5453_high_1
NF5453_high_1
[»] chr2 (10 HSPs)
chr2 (10-325)||(10973453-10973777)
chr2 (86-325)||(2973408-2973648)
chr2 (104-325)||(14230934-14231156)
chr2 (83-325)||(17826658-17826905)
chr2 (127-205)||(511241-511319)
chr2 (101-242)||(11553321-11553463)
chr2 (99-242)||(11818445-11818589)
chr2 (99-236)||(16206539-16206677)
chr2 (100-188)||(23379917-23380005)
chr2 (82-138)||(20661292-20661348)
[»] chr8 (8 HSPs)
chr8 (85-308)||(10601022-10601246)
chr8 (86-325)||(20526159-20526401)
chr8 (86-171)||(23558718-23558803)
chr8 (99-236)||(14505721-14505859)
chr8 (99-236)||(37590039-37590177)
chr8 (99-162)||(19299023-19299086)
chr8 (99-236)||(15990412-15990550)
chr8 (82-229)||(34723838-34723986)
[»] chr1 (10 HSPs)
chr1 (85-303)||(16678732-16678952)
chr1 (85-325)||(47726169-47726415)
chr1 (85-325)||(47747475-47747721)
chr1 (104-275)||(34696110-34696282)
chr1 (99-238)||(41117187-41117327)
chr1 (86-236)||(2002526-2002677)
chr1 (104-204)||(30981259-30981359)
chr1 (81-236)||(21701457-21701613)
chr1 (99-236)||(30033582-30033720)
chr1 (99-242)||(24065207-24065351)
[»] chr6 (7 HSPs)
chr6 (81-325)||(30140922-30141167)
chr6 (100-242)||(16416595-16416738)
chr6 (91-242)||(23508844-23508996)
chr6 (99-162)||(34355746-34355809)
chr6 (91-149)||(16890298-16890356)
chr6 (104-141)||(17391997-17392034)
chr6 (99-183)||(187089-187173)
[»] chr4 (15 HSPs)
chr4 (81-325)||(54027686-54027931)
chr4 (82-325)||(12355135-12355379)
chr4 (85-314)||(27066334-27066564)
chr4 (85-314)||(27087435-27087665)
chr4 (135-314)||(27066578-27066758)
chr4 (135-314)||(27066772-27066952)
chr4 (100-185)||(4462624-4462709)
chr4 (90-236)||(28860789-28860936)
chr4 (99-236)||(55227612-55227750)
chr4 (99-243)||(13686001-13686146)
chr4 (99-162)||(54823744-54823807)
chr4 (99-236)||(30859363-30859501)
chr4 (127-166)||(49745960-49745999)
chr4 (99-165)||(20527781-20527847)
chr4 (100-162)||(30190950-30191012)
[»] chr5 (11 HSPs)
chr5 (81-314)||(29754938-29755171)
chr5 (85-325)||(26683384-26683629)
chr5 (100-314)||(5335212-5335427)
chr5 (111-281)||(22864512-22864683)
chr5 (99-242)||(36044911-36045055)
chr5 (112-246)||(40299892-40300027)
chr5 (99-236)||(22292379-22292517)
chr5 (82-174)||(23976592-23976684)
chr5 (99-238)||(27493251-27493391)
chr5 (90-149)||(13948782-13948841)
chr5 (82-149)||(18759803-18759870)
[»] scaffold1964 (1 HSPs)
scaffold1964 (147-325)||(1023-1202)
[»] scaffold0643 (1 HSPs)
scaffold0643 (84-290)||(994-1201)
[»] chr3 (12 HSPs)
chr3 (88-322)||(12370776-12371011)
chr3 (111-174)||(12749485-12749548)
chr3 (86-236)||(18765582-18765733)
chr3 (99-236)||(6006037-6006175)
chr3 (82-162)||(31935315-31935395)
chr3 (104-204)||(45680111-45680211)
chr3 (99-236)||(17790152-17790290)
chr3 (99-236)||(19098594-19098732)
chr3 (99-161)||(36144802-36144864)
chr3 (99-177)||(35906934-35907012)
chr3 (90-162)||(31973573-31973645)
chr3 (99-242)||(49499404-49499548)
[»] scaffold0650 (1 HSPs)
scaffold0650 (82-242)||(288-449)
[»] chr7 (6 HSPs)
chr7 (99-242)||(48770106-48770250)
chr7 (99-236)||(32480215-32480353)
chr7 (99-238)||(15633227-15633367)
chr7 (100-162)||(30502581-30502643)
chr7 (81-162)||(3896540-3896621)
chr7 (101-183)||(27810590-27810672)
[»] scaffold0019 (1 HSPs)
scaffold0019 (104-246)||(73345-73488)
[»] scaffold0303 (1 HSPs)
scaffold0303 (90-236)||(14197-14344)
[»] scaffold0040 (1 HSPs)
scaffold0040 (99-162)||(62490-62553)
[»] scaffold0789 (1 HSPs)
scaffold0789 (82-162)||(4201-4281)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 325
Target Start/End: Original strand, 10973453 - 10973777
Alignment:
Q  10 acatcatcaatgcatgtagagtctgagattttttagcgttacatacattcacgagcctctannnnnnnnnn------gagggaaaagtgcttaatgcatt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||| ||||||||||    
T  10973453 acatcatcaatgcatgtagagtctgagattttttagcgttacatacattcacgagcctctattttttttttttttttgagggaaaagtgtttaatgcatt 10973552  T
Q  104 tcattagtaatcaaagtttcaatacaattgggtatat--gaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccac 201  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||    
T  10973553 tcattagtaatcaaagtttcaatacaattggatatatatgaaaataaattgtgggacaaacgagaaatgtggcttcccctacgagagtgtgagccaccac 10973652  T
Q  202 attagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttaccaaattctgttatgtct 300  Q
    |||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10973653 attagcttgtcgccgaacaaactccacccgagagttggtaaacttggacgagagcaaagaccgggaagccgtgatgatgttaccaaattctgttatgtct 10973752  T
Q  301 tcctgacccgaatatagagcatctt 325  Q
    |||||||||||||||||||||||||    
T  10973753 tcctgacccgaatatagagcatctt 10973777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 86 - 325
Target Start/End: Original strand, 2973408 - 2973648
Alignment:
Q  86 aaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcga 185  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||| |||||||| |||||    
T  2973408 aaaagtgcttatagcatttcattagtaatcaaagtttcaatacaattgggtatacgaaaatacatagtgggactagcgagaaatgcggcttcccttgcga 2973507  T
Q  186 gagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttacc 284  Q
    ||||||| ||||| |||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||| |||||||||||| ||    
T  2973508 gagtgtgggccacaacattagcttgtggccgaacaaactccacccgagagttggtaaacttggacgagagcaaagactaggaagccgtgatgatgttgcc 2973607  T
Q  285 aaattctgttatgtcttcctgacccgaatatagagcatctt 325  Q
    |||||| |||||||||||| ||||||| || ||||||||||    
T  2973608 aaattcagttatgtcttcccgacccgagtaaagagcatctt 2973648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 104 - 325
Target Start/End: Complemental strand, 14231156 - 14230934
Alignment:
Q  104 tcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacat 203  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  14231156 tcattaataatcaaagtttcaatacaattgggtatatgaaaatagataacgggactagcgagaaatgtggcttcccttgcaagagtgtgagccaccacat 14231057  T
Q  204 tagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttaccaaattctgttatgtcttc 302  Q
    |||||| | ||| |||||||||||| | |||||||||||||||| || | |||||||||||||| |  ||||||||||| |||||||| |||||||||||    
T  14231056 tagcttgtcgcctaacaaactccactctagagttggtaaacttggacaaaagcaaagaccgggaggctgtgatgatgtttccaaattcggttatgtcttc 14230957  T
Q  303 ctgacccgaatatagagcatctt 325  Q
    | |||||||||| ||| ||||||    
T  14230956 ccgacccgaataaagaccatctt 14230934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 83 - 325
Target Start/End: Complemental strand, 17826905 - 17826658
Alignment:
Q  83 gggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctg 182  Q
    |||||| |||||||  | ||||||||  ||||||||||||||||||||||| |||||||| ||||||| | |||||||||||| ||| ||||||| |||     
T  17826905 gggaaaggtgcttatagtatttcattgataatcaaagtttcaatacaattgagtatatgataataaatagcgggactagcgaggaatatggcttctccta 17826806  T
Q  183 cgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagag--caaagaccgggaag-tc-gtgatga 277  Q
    | | ||||||||||||||||||| ||| | ||| | |||||||||||  ||||||| |||||||| || ||||   ||||||| ||||| || |||||||    
T  17826805 caacagtgtgagccaccacattatcttgtcgcctagcaaactccaccgtagagttgctaaacttggacaagagtaaaaagaccaggaagctctgtgatga 17826706  T
Q  278 tgttaccaaattctgttatgtcttcctgacccgaatatagagcatctt 325  Q
    ||||||||||||| ||||| |||||| ||| |||||| ||||||||||    
T  17826705 tgttaccaaattcggttatatcttcccgacacgaataaagagcatctt 17826658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 511241 - 511319
Alignment:
Q  127 acaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacatta 205  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||| | ||| |||||||||||||||||||||    
T  511241 acaattgggtatatgaaaataaatagcgggactagcgagaaatgtggcttctcttgcaagagtgtgagccaccacatta 511319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 101 - 242
Target Start/End: Complemental strand, 11553463 - 11553321
Alignment:
Q  101 atttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccacca 200  Q
    ||||||||| |||| | |||||||||| | | |||||||||||||||||| ||||||||||| || ||||||||||| |||||||||   ||| | |||     
T  11553463 atttcattaataataagagtttcaatatattcgggtatatgaaaataaatggtgggactagctagtaatgtggcttctcctgcgagaacatgatcaacct 11553364  T
Q  201 cattagcttat-gccgaacaaactccacccgagagttggtaaa 242  Q
    ||||||||| | |||||  ||||||||||| ||||||||||||    
T  11553363 cattagcttgtcgccgagtaaactccaccctagagttggtaaa 11553321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 99 - 242
Target Start/End: Original strand, 11818445 - 11818589
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 198  Q
    ||||||||||| |||| | || ||||||| |||||||||| |||||||||||   ||||||||| || || |||||||| ||||| |||   ||||| ||    
T  11818445 gcatttcattaataataagaggttcaatataattgggtatctgaaaataaataacgggactagctagtaacgtggcttctcctgcaagaacatgagcaac 11818544  T
Q  199 cacattagcttat-gccgaacaaactccacccgagagttggtaaa 242  Q
    | | || |||| | ||| |||||||||||||| ||||||||||||    
T  11818545 ctcgtttgcttgtcgcctaacaaactccaccctagagttggtaaa 11818589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 16206677 - 16206539
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 198  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | ||||||||| | | | ||||| |||| ||| ||||  ||||| ||    
T  16206677 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagcatgagcaac 16206578  T
Q  199 cacattagcttat-gccgaacaaactccacccgagagtt 236  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  16206577 cacgttggcttgtcgcctaacaaactccaccctagagtt 16206539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 23380005 - 23379917
Alignment:
Q  100 catttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagag 188  Q
    |||||||||| |||| | ||||||||||||||||||||| | ||||||||  | || |||||| || |||||| |||| | ||||||||    
T  23380005 catttcattaataataatagtttcaatacaattgggtattttaaaataaacagcggaactagctagtaatgtgacttctcttgcgagag 23379917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 20661348 - 20661292
Alignment:
Q  82 agggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtat 138  Q
    |||||||  ||||||  ||||||||||  ||||||||| ||||||||||||||||||    
T  20661348 agggaaacttgcttatagcatttcattgataatcaaagattcaatacaattgggtat 20661292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 169; Significance: 2e-90; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 85 - 308
Target Start/End: Complemental strand, 10601246 - 10601022
Alignment:
Q  85 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcg 184  Q
    ||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  10601246 gaaaagtgcttatagcatttcattagtaatcaaagtttcaatataattgggtatatgaagataaatagtgggactagcgagaaatgtggcttcccctgcg 10601147  T
Q  185 agagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttac 283  Q
    ||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |    
T  10601146 agagtgtgagccaccacattagcttgtcgccgaacaaactccacctgagagttggtaaacttggacgagagcaaagaccggaaagtcgtgatgatgttgc 10601047  T
Q  284 caaattctgttatgtcttcctgacc 308  Q
    ||||||| |||||||||||| ||||    
T  10601046 caaattcagttatgtcttcccgacc 10601022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 86 - 325
Target Start/End: Original strand, 20526159 - 20526401
Alignment:
Q  86 aaaagtgcttaatgcatttcattagta--atcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgc 183  Q
    ||||||| |||  ||||||||||||||  || ||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||| ||||||||    
T  20526159 aaaagtgtttatagcatttcattagtataattaaagtttcaatacaattgggtatatgaaaataaatagtgcgactagtgagaaatgtggcctcccctgc 20526258  T
Q  184 gagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgtta 282  Q
    |||||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||   |||| ||||||    
T  20526259 gagagtatgagccaccacattaacttgtcgccgaacaaactccacccgagagttggtaaatttgaacgagagcaaaaaccgggaagcaatgataatgtta 20526358  T
Q  283 ccaaattctgttatgtcttcctgacccgaatatagagcatctt 325  Q
    || | ||| |||||||||||| ||||||| || | ||||||||    
T  20526359 ccgacttcagttatgtcttcccgacccgagtaaatagcatctt 20526401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 23558803 - 23558718
Alignment:
Q  86 aaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgt 171  Q
    |||||||||||   ||||||||||  ||||||||| |||||||| | |||||| ||||||||||| ||||||||||| ||||||||    
T  23558803 aaaagtgcttataacatttcattaacaatcaaagtctcaatacattggggtatgtgaaaataaatagtgggactagctagaaatgt 23558718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 14505859 - 14505721
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 198  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | ||||||||| | | | ||||| |||| ||| ||||  ||||| ||    
T  14505859 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagcatgagcaac 14505760  T
Q  199 cacattagcttat-gccgaacaaactccacccgagagtt 236  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  14505759 cacgttggcttgtcgcctaacaaactccaccctagagtt 14505721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 99 - 236
Target Start/End: Original strand, 37590039 - 37590177
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 198  Q
    ||||||||||| |||| | ||||||||||||||||||||||| ||||||||  | || |||||| | | | ||||| |||| ||| ||||  ||||| ||    
T  37590039 gcatttcattaataataagagtttcaatacaattgggtatattaaaataaacggcggaactagctaaagacgtggcctcccttgcaagagcatgagcaac 37590138  T
Q  199 cacattagcttat-gccgaacaaactccacccgagagtt 236  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  37590139 cacgttggcttgtcgcctaacaaactccaccctagagtt 37590177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 19299023 - 19299086
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 162  Q
    ||||||||||| |||| ||| ||||||||||||||||||||| ||||||||  | |||||||||    
T  19299023 gcatttcattaataataaaaatttcaatacaattgggtatatcaaaataaacggcgggactagc 19299086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 236
Target Start/End: Original strand, 15990412 - 15990550
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 198  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | ||||||||| | | | ||||| |||| ||| ||||  ||||| ||    
T  15990412 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagcatgagcaac 15990511  T
Q  199 cacattagcttat-gccgaacaaactccacccgagagtt 236  Q
    ||| |  |||| | ||| |||||||||||||| ||||||    
T  15990512 cacgtaggcttgtcgcctaacaaactccaccctagagtt 15990550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 229
Target Start/End: Original strand, 34723838 - 34723986
Alignment:
Q  82 agggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccct 181  Q
    |||||||  ||||||  ||||||||||| | || | || |||||||||||||||||||| | ||||||  | | ||||||| | | | |||||||| | |    
T  34723838 agggaaagatgcttagagcatttcattaatcataatagattcaatacaattgggtatatcataataaacggcgagactagctaaagacgtggcttctctt 34723937  T
Q  182 gcgagagtgtgagccaccacattagcttat-gccgaacaaactccaccc 229  Q
    || ||||| ||||| ||||| || |||| | ||| ||||||||||||||    
T  34723938 gcaagagtatgagcaaccacgttggcttgtcgcctaacaaactccaccc 34723986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 85 - 303
Target Start/End: Original strand, 16678732 - 16678952
Alignment:
Q  85 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcg 184  Q
    ||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  16678732 gaaaagtgcttatagcatttcattagtaatcaaagtttcaatccaattgggtatatgaaaataaatagtgggacaagcgagaaatgtggcttcccctgcg 16678831  T
Q  185 agagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttac 283  Q
    |||||||||||||||||||||  || | |||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| |||||||||||| |    
T  16678832 agagtgtgagccaccacattaatttgtcgccgaacaaactccacgcgagagttggtaaactttgacgagagcaaagaccgggaagccgtgatgatgttgc 16678931  T
Q  284 caaattctg-ttatgtcttcc 303  Q
    ||||||| | |||||||||||    
T  16678932 caaattcagtttatgtcttcc 16678952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 85 - 325
Target Start/End: Complemental strand, 47726415 - 47726169
Alignment:
Q  85 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcg 184  Q
    |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  47726415 gaaaagtgtttatagcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaatagtgggactagcgagaaatgtggctttccctgcg 47726316  T
Q  185 agagtgtgagccaccacat-----tagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgat 278  Q
    |||||||||| ||||||||     |||||| | ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||   ||||||||    
T  47726315 agagtgtgagacaccacattataatagcttgtcgccaaacaaactccactcgagagttggtaaacttggacgagagcaaagaccgggaatatgtgatgat 47726216  T
Q  279 gttaccaaattctgttatgtcttcctgacccgaatatagagcatctt 325  Q
    ||| |||||||| |||||||||||| ||| ||| || ||||| ||||    
T  47726215 gttgccaaattcagttatgtcttcccgactcgagtaaagagcgtctt 47726169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 85 - 325
Target Start/End: Complemental strand, 47747721 - 47747475
Alignment:
Q  85 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcg 184  Q
    |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  47747721 gaaaagtgtttatagcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaatagtgggactagcgagaaatgtggctttccctgcg 47747622  T
Q  185 agagtgtgagccaccacat-----tagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgat 278  Q
    |||||||||| ||||||||     |||||| | ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||   ||||||||    
T  47747621 agagtgtgagacaccacattataatagcttgtcgccaaacaaactccactcgagagttggtaaacttggacgagagcaaagaccgggaatatgtgatgat 47747522  T
Q  279 gttaccaaattctgttatgtcttcctgacccgaatatagagcatctt 325  Q
    ||| |||||||| |||||||||||| ||| ||| || ||||| ||||    
T  47747521 gttgccaaattcagttatgtcttcccgactcgagtaaagagcgtctt 47747475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 275
Target Start/End: Original strand, 34696110 - 34696282
Alignment:
Q  104 tcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacat 203  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||    | ||||||| ||||| ||||  || ||| ||||||| ||||| |||||||    
T  34696110 tcattaataatcaaagtttcaatacaatggggtatatgaaaataaacaacgagactagctagaaacgtggtctctccttcgagagtatgagcaaccacat 34696209  T
Q  204 tagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgat 275  Q
    |  ||| |  || | |||||||||||||||||||| | |||||| | ||||| | |  |||||||| ||||||    
T  34696210 tttcttgtctcctagcaaactccacccgagagttgttgaacttggaagagagaagaatccgggaagccgtgat 34696282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 41117327 - 41117187
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 198  Q
    ||||||||||  |||| | ||||| ||||||||||||||| | ||||||||  ||||||||||| || || |||||||| | ||| ||||  ||||| ||    
T  41117327 gcatttcattgataataatagtttgaatacaattgggtatctcaaaataaacggtgggactagctagtaacgtggcttctcttgcaagagcatgagcaac 41117228  T
Q  199 cacattagcttat-gccgaacaaactccacccgagagttgg 238  Q
    | |||| |||| | ||| |||||||||||||||||||||||    
T  41117227 ctcattggcttgtcgcctaacaaactccacccgagagttgg 41117187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 2002526 - 2002677
Alignment:
Q  86 aaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcga 185  Q
    ||||||| |||  |||| |||||| |||||||||||||||||||| | ||||||  ||||||| |    |||||||||||||||||||  || | |||||    
T  2002526 aaaagtgtttatagcatctcattaataatcaaagtttcaatacaactaggtataataaaataagtaactggactagcgagaaatgtggtctctcatgcga 2002625  T
Q  186 gagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagtt 236  Q
    |||| ||||| |||||||| |||| |  ||  ||||||||||||||||||||    
T  2002626 gagtatgagcaaccacatttgcttgtctcctgacaaactccacccgagagtt 2002677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 204
Target Start/End: Complemental strand, 30981359 - 30981259
Alignment:
Q  104 tcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacat 203  Q
    |||||| |||| ||||||||||||||| ||||||||  ||||||| |   || |||||||||||||||| | |  ||||||||||| ||||| |||||||    
T  30981359 tcattaataattaaagtttcaatacaactgggtataacaaaataagtaacggaactagcgagaaatgtgacctttcctgcgagagtatgagcaaccacat 30981260  T
Q  204 t 204  Q
    |    
T  30981259 t 30981259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 236
Target Start/End: Original strand, 21701457 - 21701613
Alignment:
Q  81 gagggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccc 180  Q
    |||||||| |||||||  ||||||||||| | || | |||||||||||||||| |||||| | ||||||  | ||||||||| | | | ||||| || |     
T  21701457 gagggaaacgtgcttatagcatttcattaatcataagagtttcaatacaattgagtatatcataataaacggcgggactagctaaagacgtggcctctcg 21701556  T
Q  181 tgcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagtt 236  Q
    ||  ||||  ||||| ||||| || |||||| ||| |||||||||||||| ||||||    
T  21701557 tgaaagagcatgagcaaccacgttggcttatcgcctaacaaactccaccctagagtt 21701613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 30033720 - 30033582
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 198  Q
    ||||||||||  |||| | |||||||||| |||||||||||| ||||||||  | ||||||||| | | | ||||| |||| ||| ||||  ||||| ||    
T  30033720 gcatttcatttataataagagtttcaatataattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagcatgagcaac 30033621  T
Q  199 cacattagcttat-gccgaacaaactccacccgagagtt 236  Q
    |||  | |||| | ||| |||||||||||||| ||||||    
T  30033620 cacgctggcttgtcgcctaacaaactccaccctagagtt 30033582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 242
Target Start/End: Complemental strand, 24065351 - 24065207
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 198  Q
    ||||||||||| |||| | |  ||||||||||| |||||| ||||||||||    ||||||||| || || |||||||| ||||| |||   ||||| ||    
T  24065351 gcatttcattaataataagaagttcaatacaatcgggtatgtgaaaataaacaacgggactagctagtaacgtggcttctcctgcaagaacatgagcaac 24065252  T
Q  199 cacattagcttat-gccgaacaaactccacccgagagttggtaaa 242  Q
    | | || |||| | ||| |||||||||||||| | ||||||||||    
T  24065251 ctcgtttgcttgtcgcctaacaaactccaccctaaagttggtaaa 24065207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 81 - 325
Target Start/End: Original strand, 30140922 - 30141167
Alignment:
Q  81 gagggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccc 180  Q
    ||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||      
T  30140922 gagggaaaagtgcttatagcatttcattaataatcaaagtttcaatacaattgggtatatgaaaatagatagcgggactagcgagaaatgtggcttcctt 30141021  T
Q  181 tgcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatg 279  Q
    ||| ||||||||| ||||||||||||||| | ||| |||||||||||||| |||||||||||||||| || | ||||||||||||||||  |||||||||    
T  30141022 tgcaagagtgtgatccaccacattagcttgtcgcctaacaaactccaccctagagttggtaaacttggacaaaagcaaagaccgggaagctgtgatgatg 30141121  T
Q  280 ttaccaaattctgttatgtcttcctgacccgaatatagagcatctt 325  Q
    || ||| |||| |||||||||||| |||||||||| ||| ||||||    
T  30141122 tttccacattccgttatgtcttcccgacccgaataaagaccatctt 30141167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 242
Target Start/End: Complemental strand, 16416738 - 16416595
Alignment:
Q  100 catttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccacc 199  Q
    |||||||||| |||| | || ||||||||||||||||||||||||||||||  || ||||||| || |||||| | || ||||| ||| |  |||| |||    
T  16416738 catttcattaataataagaggttcaatacaattgggtatatgaaaataaataatgagactagctagtaatgtgacatctcctgcaagaatacgagcaacc 16416639  T
Q  200 acattagcttat-gccgaacaaactccacccgagagttggtaaa 242  Q
     ||||  ||| | ||| |||||||| ||||| ||||||||||||    
T  16416638 tcatttacttgtcgcctaacaaactacaccctagagttggtaaa 16416595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 242
Target Start/End: Original strand, 23508844 - 23508996
Alignment:
Q  91 tgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtg 190  Q
    |||||| |||||||||||| |||| | || |||||||||||  ||||| ||||| ||||    |||||||||  | ||||||||||| ||||| |||       
T  23508844 tgcttattgcatttcattaataataagaggttcaatacaatcaggtatgtgaaattaaacaacgggactagctcgtaatgtggcttctcctgcaagaaca 23508943  T
Q  191 tgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaa 242  Q
    ||||| ||| |||| |||| | ||| |||||||||||||| ||| ||||||||    
T  23508944 tgagcaaccccatttgcttgtcgcctaacaaactccaccctagaattggtaaa 23508996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 34355746 - 34355809
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 162  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | |||||||||    
T  34355746 gcatttcattgataataagagtttcaatacaattgggtatatcaaaataaacagcgggactagc 34355809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 16890356 - 16890298
Alignment:
Q  91 tgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaa 149  Q
    |||||| |||||||||||| |||  | |||||||| |||||||||||||| ||||||||    
T  16890356 tgcttattgcatttcattaataacaagagtttcaaaacaattgggtatatcaaaataaa 16890298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 17391997 - 17392034
Alignment:
Q  104 tcattagtaatcaaagtttcaatacaattgggtatatg 141  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  17391997 tcattaataatcaaagtttcaatacaatagggtatatg 17392034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 187173 - 187089
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgc 183  Q
    ||||||||||| |||| | || |||||||||||||| ||| | |||||||||     ||||||| |||||||||||||| |||||    
T  187173 gcatttcattaataataagagattcaatacaattggatatgttaaaataaataacaagactagctagaaatgtggcttctcctgc 187089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 81 - 325
Target Start/End: Original strand, 54027686 - 54027931
Alignment:
Q  81 gagggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccc 180  Q
    |||||||| |||||||   |||||||||| ||||||||||||||||| |||||||||||||||||||||| | |||| ||||||||||||||||||||||    
T  54027686 gagggaaatgtgcttatatcatttcattaataatcaaagtttcaatataattgggtatatgaaaataaatagcgggagtagcgagaaatgtggcttcccc 54027785  T
Q  181 tgcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatg 279  Q
    | | ||||||||||||||||||||||||| | ||| || ||||||||||| |||||||||||||||| || |||| |||||||||||||| |||||||||    
T  54027786 tacaagagtgtgagccaccacattagcttgtcgcctaaaaaactccaccctagagttggtaaacttggacaagagtaaagaccgggaagttgtgatgatg 54027885  T
Q  280 ttaccaaattctgttatgtcttcctgacccgaatatagagcatctt 325  Q
    ||||||||||| ||||| |||||| ||| |||| | ||||| ||||    
T  54027886 ttaccaaattcggttatatcttcccgactcgaacaaagagcgtctt 54027931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 82 - 325
Target Start/End: Complemental strand, 12355379 - 12355135
Alignment:
Q  82 agggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccct 181  Q
    ||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||  |    
T  12355379 agggaaaggtgcttaaagcatttcattaataatcaaagtttcaatacaattgggtatatgaaaatagatagtgggactagcgagaaatgtggtttccttt 12355280  T
Q  182 gcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgt 280  Q
    |  ||||||||||||||||||||| ||| | ||| |||||||||||||| |||||||||||||||| || | ||||| ||||||||||  |||||||| |    
T  12355279 ggaagagtgtgagccaccacattaccttgtcgcctaacaaactccaccctagagttggtaaacttggacaaaagcaaggaccgggaagctgtgatgatat 12355180  T
Q  281 taccaaattctgttatgtcttcctgacccgaatatagagcatctt 325  Q
    | |||||||| |||||||||||| |||||||||| ||| ||||||    
T  12355179 ttccaaattccgttatgtcttcccgacccgaataaagaccatctt 12355135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 85 - 314
Target Start/End: Original strand, 27066334 - 27066564
Alignment:
Q  85 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcg 184  Q
    |||| |||||||  ||||||||||| ||||||||||||||||||||||| ||||||||||||| || | |||||||||||||||||||||||||  |||     
T  27066334 gaaatgtgcttatagcatttcattaataatcaaagtttcaatacaattgagtatatgaaaatagatagcgggactagcgagaaatgtggcttcctttgca 27066433  T
Q  185 agagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttac 283  Q
    ||||||||| ||||||||||||||| | ||| |||||||||||||| |||||||||||||||| || | ||||||||||||||||| ||||||||||| |    
T  27066434 agagtgtgacccaccacattagcttgtcgcccaacaaactccaccctagagttggtaaacttggacaaaagcaaagaccgggaagttgtgatgatgtttc 27066533  T
Q  284 caaattctgttatgtcttcctgacccgaata 314  Q
    |||||||  ||||||||||| ||||||||||    
T  27066534 caaattccattatgtcttcccgacccgaata 27066564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 85 - 314
Target Start/End: Original strand, 27087435 - 27087665
Alignment:
Q  85 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcg 184  Q
    |||| |||||||  ||||||||||| ||||||||||||||||||||||| ||||||||||||| || | |||||||||||||||||||||||||  |||     
T  27087435 gaaatgtgcttatagcatttcattaataatcaaagtttcaatacaattgagtatatgaaaatagatagcgggactagcgagaaatgtggcttcctttgca 27087534  T
Q  185 agagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttac 283  Q
    ||||||||| ||||||||||||||| | ||| |||||||||||||| |||||||||||||||| || | |||||||||||| |||| ||||||||||| |    
T  27087535 agagtgtgacccaccacattagcttgtcgcctaacaaactccaccctagagttggtaaacttggacaaaagcaaagaccggaaagttgtgatgatgtttc 27087634  T
Q  284 caaattctgttatgtcttcctgacccgaata 314  Q
    |||||||  ||||||||||| ||||||||||    
T  27087635 caaattccattatgtcttcccgacccgaata 27087665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 135 - 314
Target Start/End: Original strand, 27066578 - 27066758
Alignment:
Q  135 gtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgaga 233  Q
    ||||||||||||| || | |||||||||||||||||||||||||  ||| ||||||||| ||||||||||||||| | ||| |||||||||||||| |||    
T  27066578 gtatatgaaaatagatagcgggactagcgagaaatgtggcttcctttgcaagagtgtgacccaccacattagcttgtcgcctaacaaactccaccctaga 27066677  T
Q  234 gttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttaccaaattctgttatgtcttcctgacccgaata 314  Q
    ||||||||||||| || | |||||||||||| |||| ||||||||||| ||||||||  ||||||||||| ||||||||||    
T  27066678 gttggtaaacttggacaaaagcaaagaccggaaagttgtgatgatgtttccaaattccattatgtcttcccgacccgaata 27066758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 135 - 314
Target Start/End: Original strand, 27066772 - 27066952
Alignment:
Q  135 gtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgaga 233  Q
    ||||||||||||| || | |||||||||||||||||||||||||  ||| ||||||||| ||||||||||||||| | ||| |||||||||||||| |||    
T  27066772 gtatatgaaaatagatagcgggactagcgagaaatgtggcttcctttgcaagagtgtgacccaccacattagcttgtcgcctaacaaactccaccctaga 27066871  T
Q  234 gttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttaccaaattctgttatgtcttcctgacccgaata 314  Q
    ||||||||||||| || | |||||||||||| |||| ||||||||||| ||||||||  ||||||||||| ||||||||||    
T  27066872 gttggtaaacttggacaaaagcaaagaccggaaagttgtgatgatgtttccaaattccattatgtcttcccgacccgaata 27066952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 4462709 - 4462624
Alignment:
Q  100 catttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcga 185  Q
    ||||| |||| |||| |||||||||||||| |  | ||||||||||||||||||||||||||  || ||||||||||| |||||||    
T  4462709 cattttattaataataaaagtttcaatacattcagatatatgaaaataaattgtgggactagttagtaatgtggcttctcctgcga 4462624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 28860936 - 28860789
Alignment:
Q  90 gtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagt 189  Q
    |||||||  |||| |||||  ||||||||| ||||||||||||| |||||  | |||||| |  || |||||| |  |||||||| || |  ||||||||    
T  28860936 gtgcttatagcatatcatttataatcaaagattcaatacaattgagtatagcataataaactacggcactagctaataatgtggcctctctagcgagagt 28860837  T
Q  190 gtgagccaccacattagcttat-gccgaacaaactccacccgagagtt 236  Q
    |||||| |||||||| |||| | ||| |||||||||||||||||||||    
T  28860836 gtgagctaccacattggcttgtcgcctaacaaactccacccgagagtt 28860789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 55227750 - 55227612
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 198  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | ||||||||| | | ||||||| |||| ||| ||||  ||||| ||    
T  55227750 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagatgtggcctcccttgcaagagcatgagcaac 55227651  T
Q  199 cacattagcttat-gccgaacaaactccacccgagagtt 236  Q
    ||| || | || | ||| |||||||||||||| ||||||    
T  55227650 cacgttggtttgtcgcctaacaaactccaccctagagtt 55227612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 243
Target Start/End: Complemental strand, 13686146 - 13686001
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 198  Q
    ||||||||||| |||| | || ||||||||||| |||||||||||||||||   |||||||||| || || ||| |||| | ||| |||   ||||| ||    
T  13686146 gcatttcattaataataagagattcaatacaatcgggtatatgaaaataaacaatgggactagctagtaacgtgacttctcttgcaagaacatgagcaac 13686047  T
Q  199 cacattagcttat-gccgaacaaactccacccgagagttggtaaac 243  Q
    | | || |||| | ||| |||||||||||||| |||||||||||||    
T  13686046 cccgtttgcttgtcgcctaacaaactccaccctagagttggtaaac 13686001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 54823807 - 54823744
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 162  Q
    ||||||||||| |||| ||| ||||||||||||||||||||| ||||||||  | |||||||||    
T  54823807 gcatttcattaataataaaaatttcaatacaattgggtatatcaaaataaacggcgggactagc 54823744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 30859501 - 30859363
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 198  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | ||||||||  | | | ||||| |||| ||| ||||  ||||| ||    
T  30859501 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagttaaagacgtggcctcccttgcaagagcatgagcaac 30859402  T
Q  199 cacattagcttat-gccgaacaaactccacccgagagtt 236  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  30859401 cacgttggcttgtcgcctaacaaactccaccctagagtt 30859363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 166
Target Start/End: Original strand, 49745960 - 49745999
Alignment:
Q  127 acaattgggtatatgaaaataaattgtgggactagcgaga 166  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  49745960 acaattgggtatatgaaaataaatagtgggacaagcgaga 49745999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 20527781 - 20527847
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgag 165  Q
    ||||||||||  |||| | |||||||||||||| |||||||| | ||||||| | ||||||||||||    
T  20527781 gcatttcattgataataagagtttcaatacaatcgggtatatcataataaatggcgggactagcgag 20527847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 30190950 - 30191012
Alignment:
Q  100 catttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 162  Q
    |||||||||| |||| | ||||||||||||||||| ||||| ||||||||  | |||||||||    
T  30190950 catttcattaataataagagtttcaatacaattggatatatcaaaataaacggcgggactagc 30191012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 5e-63; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 81 - 314
Target Start/End: Original strand, 29754938 - 29755171
Alignment:
Q  81 gagggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccc 180  Q
    |||||||| |||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||| |      
T  29754938 gagggaaaggtgcttatagcatttcattaataatcaaagtttcaatacaattgggtatatgaaaatagatagcgggactagcgagaaatgtggctt-ctt 29755036  T
Q  181 tgcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatg 279  Q
    ||| ||||||||||||||||||||||||| | ||| |||||||||||||| |||||||||||||||| || | ||||| ||||||||||   ||||||||    
T  29755037 tgcaagagtgtgagccaccacattagcttgtcgcctaacaaactccaccctagagttggtaaacttggacaaaagcaaggaccgggaagctatgatgatg 29755136  T
Q  280 ttaccaaattctgttatgtcttcctgacccgaata 314  Q
    || |||||||| ||||||||||||  |||||||||    
T  29755137 tttccaaattccgttatgtcttcccaacccgaata 29755171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 85 - 325
Target Start/End: Complemental strand, 26683629 - 26683384
Alignment:
Q  85 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcg 184  Q
    ||||||||||||  | ||||||||||||||| |||||||||||||| || |||||||||||||||| | ||||||||| ||||||||||| ||||||||     
T  26683629 gaaaagtgcttatagaatttcattagtaatcgaagtttcaatacaactgagtatatgaaaataaatagcgggactagcaagaaatgtggcctcccctgca 26683530  T
Q  185 agagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttac 283  Q
    ||||| ||||||||||||||| ||| | || |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||   |||| |||||||    
T  26683529 agagtatgagccaccacattaacttgtcgcggaacaaactccacccgagagttggaaaacttggacgagagcaaagacggggaagcaatgataatgttac 26683430  T
Q  284 caaattctgt----tatgtcttcctgacccgaatatagagcatctt 325  Q
    | | ||| ||    |||||||||| ||||||| || ||||||||||    
T  26683429 cgacttcagttatatatgtcttccagacccgagtaaagagcatctt 26683384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 100 - 314
Target Start/End: Original strand, 5335212 - 5335427
Alignment:
Q  100 catttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccacc 199  Q
    |||||||||| ||||||||||||||||| |||||| | |||||||||| || | | |||||||||||||||||||||||  ||| ||||||||||||| |    
T  5335212 catttcattaataatcaaagtttcaatataattggatttatgaaaatagatagcgagactagcgagaaatgtggcttcctttgcaagagtgtgagccaac 5335311  T
Q  200 acattagctt-atgccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttaccaaattctgttatgt 298  Q
    ||||||||||  |||| |||||||||||||| |||||||||||||||| || | | ||||||| ||||||  ||||||||||| |||||||| |||||||    
T  5335312 acattagcttgttgcctaacaaactccaccctagagttggtaaacttggacaaaaacaaagactgggaagctgtgatgatgtttccaaattcagttatgt 5335411  T
Q  299 cttcctgacccgaata 314  Q
    ||||| ||||||||||    
T  5335412 cttcccgacccgaata 5335427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 111 - 281
Target Start/End: Original strand, 22864512 - 22864683
Alignment:
Q  111 taatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacattagctt- 209  Q
    ||||||| |||||||||||||| ||||||| |||| |||| | ||||||||||| |||| |||| ||  |  ||||| | ||||||| || ||||| ||     
T  22864512 taatcaacgtttcaatacaattaggtatataaaaacaaatagcgggactagcgataaatatggcctcttcgacgagaatatgagccaacatattagtttg 22864611  T
Q  210 atgccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgtt 281  Q
     |||| |||||||| ||| |||||||||||||||||| |||| |||||||| | |||||  ||||| |||||    
T  22864612 ttgcctaacaaacttcactcgagagttggtaaacttggacgaaagcaaagatcaggaagcagtgataatgtt 22864683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 242
Target Start/End: Complemental strand, 36045055 - 36044911
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 198  Q
    ||||||||||| |||| | || ||||||||| | ||| |||||||||||||| ||||||||||| || ||||||||||| ||| | ||| | ||||| ||    
T  36045055 gcatttcattaataataagagattcaatacattcgggcatatgaaaataaatggtgggactagctagtaatgtggcttctcctacaagaatatgagcaac 36044956  T
Q  199 cacattagcttat-gccgaacaaactccacccgagagttggtaaa 242  Q
    | |||| |||| | ||| |||||||| ||| | ||||||||||||    
T  36044955 ctcattggcttgtcgcctaacaaacttcactctagagttggtaaa 36044911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 112 - 246
Target Start/End: Complemental strand, 40300027 - 40299892
Alignment:
Q  112 aatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacattagcttat 211  Q
    ||||||||| |||||||||   ||||||||||||||||    || |||||||||||||||||| ||  || ||||||| ||||| ||||| || |||| |    
T  40300027 aatcaaagtctcaatacaaagtggtatatgaaaataaacaacggaactagcgagaaatgtggcctcttctacgagagtatgagcaaccacgtttgcttgt 40299928  T
Q  212 -gccgaacaaactccacccgagagttggtaaacttg 246  Q
     ||| |||||||||||||||||||||| | ||||||    
T  40299927 cgcctaacaaactccacccgagagttgttgaacttg 40299892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 22292517 - 22292379
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 198  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | ||||||||| | | | ||||| |||| ||| ||||  ||||| ||    
T  22292517 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagcatgagcaac 22292418  T
Q  199 cacattagcttat-gccgaacaaactccacccgagagtt 236  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  22292417 cacgttggcttgtcgcctaacaaactccaccctagagtt 22292379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 23976684 - 23976592
Alignment:
Q  82 agggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggc 174  Q
    |||||||||||||||  |||| |||||| |||||||||||||||||||  | ||||||  ||||||| |   ||||||| |||||||||||||    
T  23976684 agggaaaagtgcttatagcatatcattaataatcaaagtttcaatacatctaggtataataaaataagtaacgggactaacgagaaatgtggc 23976592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 27493391 - 27493251
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 198  Q
    ||||||||||  ||||||||| |||||||||||||||||||  | |||||| || ||||||||| |  || ||||| ||  |||||||||| |||||  |    
T  27493391 gcatttcatttataatcaaagattcaatacaattgggtataacataataaactgcgggactagctaataacgtggcctcttctgcgagagtatgagctgc 27493292  T
Q  199 cacattagcttat-gccgaacaaactccacccgagagttgg 238  Q
     ||||| |||| | ||  ||||||||||||| |||||||||    
T  27493291 tacattggcttgtcgcttaacaaactccacctgagagttgg 27493251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 13948782 - 13948841
Alignment:
Q  90 gtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaa 149  Q
    |||||||  |||| ||| || ||||||||||||||||||||| |||||||||||||||||    
T  13948782 gtgcttatagcatatcaataataatcaaagtttcaatacaatagggtatatgaaaataaa 13948841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 18759870 - 18759803
Alignment:
Q  82 agggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaa 149  Q
    |||||||  ||||||  ||||||||||| |||| |||||||||||| |||||||||||| ||||||||    
T  18759870 agggaaacatgcttatagcatttcattaataataaaagtttcaatataattgggtatatcaaaataaa 18759803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1964 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 147 - 325
Target Start/End: Complemental strand, 1202 - 1023
Alignment:
Q  147 aaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaactt 245  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  1202 aaatagtggaactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacattagcttgtcgccgaacaaactccacccgagagttggtaaactt 1103  T
Q  246 gaacgagagcaaagaccgggaagtcgtgatgatgttaccaaattctgttatgtcttcctgacccgaatatagagcatctt 325  Q
    | |||||||||||||| || ||| |||||| ||||| |||||||| |||||||||||| ||||||| || ||||| ||||    
T  1102 ggacgagagcaaagactggaaagccgtgataatgttgccaaattcagttatgtcttcccgacccgagtaaagagcgtctt 1023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0643 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 84 - 290
Target Start/End: Complemental strand, 1201 - 994
Alignment:
Q  84 ggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgc 183  Q
    ||||| |||||||  ||||||||||| ||||||||  |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||     
T  1201 ggaaaggtgcttatagcatttcattaataatcaaacattcaatacaattgggtatatgaaaataaatagcgggactagcgagaaatgtggcttcccttgt 1102  T
Q  184 gagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgtta 282  Q
     ||| |||||||||||||||||| || | ||| |||||||||||||| |||||||||||||||| || | |||| ||||||||| |  |||||||||||     
T  1101 aagattgtgagccaccacattagtttgtcgcctaacaaactccaccctagagttggtaaacttggacaaaagcatagaccgggaggctgtgatgatgttt 1002  T
Q  283 ccaaattc 290  Q
    ||||||||    
T  1001 ccaaattc 994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 88 - 322
Target Start/End: Original strand, 12370776 - 12371011
Alignment:
Q  88 aagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgaga 187  Q
    |||||||||  |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |  |||||||| ||||||||||| |||||||| |||    
T  12370776 aagtgcttatagcattttattagtaatcaaagtttcaatacaattggatatatgaaaataaatagcaggactagcaagaaatgtggcctcccctgcaaga 12370875  T
Q  188 gtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttaccaa 286  Q
    || |||| |||||||||||||| | |||||| |||||||||| ||||||||| ||||||| || | | |||||| ||||||   ||||| |||||||| |    
T  12370876 gtatgagtcaccacattagcttgtcgccgaataaactccaccagagagttggcaaacttggacaaaaacaaagatcgggaaacagtgataatgttaccga 12370975  T
Q  287 attctgttatgtcttcctgacccgaatatagagcat 322  Q
     ||| |||||||||||| ||||||| || |||||||    
T  12370976 cttcagttatgtcttcccgacccgagtaaagagcat 12371011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 12749548 - 12749485
Alignment:
Q  111 taatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggc 174  Q
    |||||||||||||||||||||| |||| ||||||||||||   |||||||||||||||||||||    
T  12749548 taatcaaagtttcaatacaattaggtacatgaaaataaataacgggactagcgagaaatgtggc 12749485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 18765582 - 18765733
Alignment:
Q  86 aaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcga 185  Q
    |||||||||||  ||||||||||  ||||  ||| |||||||||||||||||||  | ||||||||  || |||||| |  |||||||| || |  ||||    
T  18765582 aaaagtgcttatagcatttcatttataatagaagattcaatacaattgggtataacataataaattacggcactagctattaatgtggcctctctagcga 18765681  T
Q  186 gagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagtt 236  Q
    |||| ||||| |||| ||| |||| | ||| |||||||||||||||||||||    
T  18765682 gagtatgagctaccaaattggcttgtcgcctaacaaactccacccgagagtt 18765733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 99 - 236
Target Start/End: Original strand, 6006037 - 6006175
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 198  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | ||||||||| | | | |||||||||| ||| ||||  ||||  ||    
T  6006037 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcttcccttgcaagagcatgagaaac 6006136  T
Q  199 cacattagcttat-gccgaacaaactccacccgagagtt 236  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  6006137 cacgttggcttgtcgcctaacaaactccaccctagagtt 6006175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 31935395 - 31935315
Alignment:
Q  82 agggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 162  Q
    ||||||| |||||||  ||||||||||| | ||||||| |||||||||||||||||||| | ||||||  | |||||||||    
T  31935395 agggaaacgtgcttagagcatttcattaatcatcaaagattcaatacaattgggtatatcataataaacggcgggactagc 31935315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 45680111 - 45680211
Alignment:
Q  104 tcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacat 203  Q
    |||||| |||||||||| |||||||||||||||||| |||||||||    ||||||||| | ||||||||| || | ||| ||||| ||||| | |||||    
T  45680111 tcattaataatcaaagtctcaatacaattgggtatacgaaaataaacaaagggactagcaaaaaatgtggcctctcttgcaagagtatgagcaatcacat 45680210  T
Q  204 t 204  Q
    |    
T  45680211 t 45680211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 17790290 - 17790152
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 198  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  |   ||||||| | | | ||||| |||| ||| |||| |||||| ||    
T  17790290 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggctagactagctaaagacgtggcctcccttgcaagagcgtgagcaac 17790191  T
Q  199 cacattagcttat-gccgaacaaactccacccgagagtt 236  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  17790190 cacgttggcttgtcgcctaacaaactccaccctagagtt 17790152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 19098732 - 19098594
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 198  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  |   ||||||| | | | ||||| |||| ||| |||| |||||| ||    
T  19098732 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggctagactagctaaagacgtggcctcccttgcaagagcgtgagcaac 19098633  T
Q  199 cacattagcttat-gccgaacaaactccacccgagagtt 236  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  19098632 cacgttggcttgtcgcctaacaaactccaccctagagtt 19098594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 36144864 - 36144802
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactag 161  Q
    ||||||||||| |||  | || ||||||||||| |||||||||||||||||| ||||||||||    
T  36144864 gcatttcattaataacaagaggttcaatacaatcgggtatatgaaaataaatagtgggactag 36144802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 35906934 - 35907012
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttc 177  Q
    ||||||||||  |||| | ||||||||||||||||||||| | ||||||||  | ||||||||| || || ||||||||    
T  35906934 gcatttcattgataatgatagtttcaatacaattgggtatctcaaaataaacagcgggactagctagtaacgtggcttc 35907012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 31973645 - 31973573
Alignment:
Q  90 gtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 162  Q
    |||||||  ||||||||||| | || |||| |||||||||||||||||||| | ||||||  | |||||||||    
T  31973645 gtgcttagagcatttcattaatcattaaagattcaatacaattgggtatatcataataaacggcgggactagc 31973573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 242
Target Start/End: Complemental strand, 49499548 - 49499404
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 198  Q
    ||||||||||| |||| | || ||||||||||| || ||| | |||||||||   | ||||||| ||||| |||||||| | ||| |||   |||||  |    
T  49499548 gcatttcattaataataagagattcaatacaatcggatatgttaaaataaataacgagactagctagaaacgtggcttctcttgcaagaacatgagcagc 49499449  T
Q  199 cacattagcttat-gccgaacaaactccacccgagagttggtaaa 242  Q
    |||||| |||| | ||| | |||||||||||| ||||||||||||    
T  49499448 cacatttgcttgtcgcctagcaaactccaccctagagttggtaaa 49499404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 82 - 242
Target Start/End: Original strand, 288 - 449
Alignment:
Q  82 agggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccct 181  Q
    |||||||||||||||    ||||||||||||||||||| |||||||||||||||||||||||||||||| | || |||||| |||||||||   ||||||    
T  288 agggaaaagtgcttataatatttcattagtaatcaaagcttcaatacaattgggtatatgaaaataaatagcggaactagcaagaaatgtgatctcccct 387  T
Q  182 gcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaa 242  Q
     | ||||| ||| ||||||||||||||||| | ||| ||||||| |||||||||||||||||    
T  388 tcaagagtatgaaccaccacattagcttatcgtcgagcaaactctacccgagagttggtaaa 449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 99 - 242
Target Start/End: Complemental strand, 48770250 - 48770106
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 198  Q
    ||||||||||| |||| | |||||||||||| | |||||||||||||||||| |||||||||||  | ||||||||||| |||||||||   ||||| ||    
T  48770250 gcatttcattaataataagagtttcaatacattcgggtatatgaaaataaatggtgggactagcttgtaatgtggcttctcctgcgagaacatgagcaac 48770151  T
Q  199 cacattagcttat-gccgaacaaactccacccgagagttggtaaa 242  Q
    | ||||||||| | |||||| ||||||||||| ||||||||||||    
T  48770150 ctcattagcttctcgccgaataaactccaccctagagttggtaaa 48770106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 32480353 - 32480215
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 198  Q
    ||||||||||| |||| | |||||||||||||||| |||||| |||||||| || ||||||||| | | | ||||| |||| ||| ||||| ||||| ||    
T  32480353 gcatttcattaataataagagtttcaatacaattgagtatattaaaataaactgcgggactagctaaagacgtggcctcccttgcaagagtatgagcaac 32480254  T
Q  199 cacattagcttat-gccgaacaaactccacccgagagtt 236  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  32480253 cacgttggcttgtcgcctaacaaactccaccctagagtt 32480215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 15633367 - 15633227
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 198  Q
    ||||||||||  |||| | ||||||||||||||||||||| | ||| ||||    ||||||||| || || |||||||| | ||| ||||| ||||| ||    
T  15633367 gcatttcattgataataatagtttcaatacaattgggtatttcaaagtaaacaacgggactagctagtaacgtggcttctcttgcaagagtatgagcaac 15633268  T
Q  199 cacattagcttat-gccgaacaaactccacccgagagttgg 238  Q
    | |||| |||| | ||| |||||||||||||||||||||||    
T  15633267 ctcattggcttgtcgcctaacaaactccacccgagagttgg 15633227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 30502643 - 30502581
Alignment:
Q  100 catttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 162  Q
    |||||||||| |||| | |||||||||||||| |||||||| |||||||| || |||||||||    
T  30502643 catttcattaataataagagtttcaatacaatcgggtatatcaaaataaactgcgggactagc 30502581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 3896621 - 3896540
Alignment:
Q  81 gagggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 162  Q
    ||||||||  ||||||  ||||||||||| |||| | |||||||||||||| |||||||| ||||||||  | |||||||||    
T  3896621 gagggaaacatgcttatagcatttcattaataataagagtttcaatacaatcgggtatatcaaaataaacggcgggactagc 3896540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 27810672 - 27810590
Alignment:
Q  101 atttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgc 183  Q
    ||||||||  |||| | ||||||||||||| ||||||||| ||||||||  | | ||||||| || |||||||| ||||||||    
T  27810672 atttcatttataataatagtttcaatacaactgggtatattaaaataaacagcgagactagcaaggaatgtggcctcccctgc 27810590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 246
Target Start/End: Original strand, 73345 - 73488
Alignment:
Q  104 tcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacat 203  Q
    |||||| |||||||||||||||||||||||||||||| ||| ||||    ||||||||| ||||| ||||  || |||||||| || | ||| |||||||    
T  73345 tcattaataatcaaagtttcaatacaattgggtatataaaagtaaacaacgggactagctagaaacgtggtctctcctgcgagtgtatcagcaaccacat 73444  T
Q  204 tagcttat-gccgaacaaactccacccgagagttggtaaacttg 246  Q
    | |||| |  |  | |||||||||||||||||||| | ||||||    
T  73445 ttgcttgtctcttagcaaactccacccgagagttgttgaacttg 73488  T

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Target: scaffold0303 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 14344 - 14197
Alignment:
Q  90 gtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagt 189  Q
    |||||||  ||||||||||   |||| ||| ||||||||||||||||||| || |||||| |  || |||||| |  |||||||| || |  | || |||    
T  14344 gtgcttatagcatttcatttacaatcgaagattcaatacaattgggtataggataataaactacggcactagctaataatgtggcctctctagggacagt 14245  T
Q  190 gtgagccaccacattagcttat-gccgaacaaactccacccgagagtt 236  Q
    |||||| |||||||| |||| | ||| |||||||||||||||||||||    
T  14244 gtgagctaccacattggcttgtcgcctaacaaactccacccgagagtt 14197  T

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Target: scaffold0040 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 62490 - 62553
Alignment:
Q  99 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 162  Q
    ||||||||||| |||| | |||||||||||||||| |||||| ||||||||  | |||||||||    
T  62490 gcatttcattaataataagagtttcaatacaattgagtatattaaaataaacagcgggactagc 62553  T

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Target: scaffold0789 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0789
Description:

Target: scaffold0789; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 4201 - 4281
Alignment:
Q  82 agggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 162  Q
    ||||||| |||||||  ||||||||||  |||| | ||||||||||||| ||||||||| | | ||||| | |||||||||    
T  4201 agggaaacgtgcttatagcatttcattgataataatagtttcaatacaagtgggtatatcatattaaatggcgggactagc 4281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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