View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5453_high_11 (Length: 236)
Name: NF5453_high_11
Description: NF5453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5453_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 3108775 - 3108864
Alignment:
| Q |
133 |
gaggaaataaatgtaaatttgtaagtgctttggagtcctaaaatcttttgtgccttcaatttttgtgtatgtaggttttcaggggaaaag |
222 |
Q |
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| T |
3108775 |
gaggaaataaatgtaaatttgtaagtgctttggagtcctaaaatcttttatgtcttcaatttttgtgtatgtaggttttcaggggaaaag |
3108864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 3108581 - 3108701
Alignment:
| Q |
1 |
gtgataacaaaatataatggggtaacatttgggtgacataactctcttaaatagctctctcgtctaaataatatattttaattattcgttcatcattttc |
100 |
Q |
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| T |
3108581 |
gtgataacaagatataatgggataacatttgggtgacataactctcttaaatagttcttttgactaaataatatattttaatcatttattcgtcattctc |
3108680 |
T |
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| Q |
101 |
ttttctaaaatgcattaataa |
121 |
Q |
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| T |
3108681 |
ttttctaaaatgcattaataa |
3108701 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 32279353 - 32279307
Alignment:
| Q |
55 |
ctctctcgtctaaataatatattttaattattcgttcatcattttct |
101 |
Q |
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| T |
32279353 |
ctctctcatttaaataatttattttaattattcattcatcattttct |
32279307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 27554981 - 27554936
Alignment:
| Q |
56 |
tctctcgtctaaataatatattttaattattcgttcatcattttct |
101 |
Q |
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| T |
27554981 |
tctctcatctaaataatctattttaattatttattcatcattttct |
27554936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 42467011 - 42466974
Alignment:
| Q |
60 |
tcgtctaaataatatattttaattattcgttcatcatt |
97 |
Q |
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| T |
42467011 |
tcgtctaaataatttattttaattattcattcatcatt |
42466974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 50700046 - 50700103
Alignment:
| Q |
55 |
ctctctcgtctaaataatatattttaattattcgttcatcattttcttttctaaaatg |
112 |
Q |
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| T |
50700046 |
ctctctcgtctaaataatttattttaatcatttattcatcattctctcatctaaaatg |
50700103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 53406540 - 53406500
Alignment:
| Q |
63 |
tctaaataatatattttaattattcgttcatcattttcttt |
103 |
Q |
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| T |
53406540 |
tctaaataatttattttaattatttattcatcattttcttt |
53406500 |
T |
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