View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5453_high_14 (Length: 218)
Name: NF5453_high_14
Description: NF5453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5453_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 42674066 - 42673881
Alignment:
| Q |
18 |
catttgtcttgtgatattcggtagttttgttttctacagaaggtggaacaagccttgccaaaccaacatcgctgatcttgcttacgtagtttctgtctaa |
117 |
Q |
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| T |
42674066 |
catttgtcttgtgatattcggtagttttgttttctacagaaggtggaacaagccttgccaaaccaacatcgctgatcttgcttacgtagtttctgtctaa |
42673967 |
T |
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| Q |
118 |
gagaatgtttgctggtttgagatcgcgatgcacaaccggttctggttttgtctggtgaaggaaaagaaggcctgtcgcaatctctg |
203 |
Q |
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| T |
42673966 |
gagaatgtttgctggtttgagatcgcgatgcacaaccggttctggttttgtctggtgaaggaaaagaaggcctgtcgcaatctctg |
42673881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 74 - 201
Target Start/End: Complemental strand, 6516861 - 6516734
Alignment:
| Q |
74 |
gccaaaccaacatcgctgatcttgcttacgtagtttctgtctaagagaatgtttgctggtttgagatcgcgatgcacaaccggttctggttttgtctggt |
173 |
Q |
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| T |
6516861 |
gccaaaccaacatcactgatcttgctaacgtagtttttgtctaagagaatgtttcctggtttcatatcacgatgtactattggatctggctttgattggt |
6516762 |
T |
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| Q |
174 |
gaaggaaaagaaggcctgtcgcaatctc |
201 |
Q |
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| T |
6516761 |
gaaggaaaagaaggccagtggcaatctc |
6516734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 53 - 186
Target Start/End: Original strand, 35083066 - 35083199
Alignment:
| Q |
53 |
acagaaggtggaacaagccttgccaaaccaacatcgctgatcttgcttacgtagtttctgtctaagagaatgtttgctggtttgagatcgcgatgcacaa |
152 |
Q |
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| T |
35083066 |
acagaaggaggaacaagccttgctaaaccaacatcaccaatcttgctcacatagtttcggtcaagcaaaatgtttccaggttttaagtcacgatgcacaa |
35083165 |
T |
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| Q |
153 |
ccggttctggttttgtctggtgaaggaaaagaag |
186 |
Q |
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| T |
35083166 |
tcggttctggtttagtctggtgaaggaaaagaag |
35083199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 186
Target Start/End: Complemental strand, 3686709 - 3686574
Alignment:
| Q |
51 |
ctacagaaggtggaacaagccttgccaaaccaacatcgctgatcttgcttacgtagtttctgtctaagagaatgtttgctggtttgagatcgcgatgcac |
150 |
Q |
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| T |
3686709 |
ctacagaaggtggtactaatcttgctaaaccaacatcacttattttgctaacaaaatttttgtctaagagaatgttggctggtttaaggtctctatgaac |
3686610 |
T |
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| Q |
151 |
aaccggttctggttttgtctggtgaaggaaaagaag |
186 |
Q |
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| T |
3686609 |
aattgcttctggttttgtttggtgaaggaaaagaag |
3686574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 48235835 - 48235926
Alignment:
| Q |
95 |
ttgcttacgtagtttctgtctaagagaatgtttgctggtttgagatcgcgatgcacaaccggttctggttttgtctggtgaaggaaaagaag |
186 |
Q |
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| T |
48235835 |
ttgctcacgtaatttttgtctaacaaaatgtttgatggtttaaggtctcgatgcacgattggctctggctttgtttggtgaaggaaaagaag |
48235926 |
T |
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