View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5453_high_15 (Length: 204)
Name: NF5453_high_15
Description: NF5453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5453_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 33618301 - 33618470
Alignment:
| Q |
17 |
agaagaacttatcaagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33618301 |
agaagaacttatcaagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggca |
33618400 |
T |
|
| Q |
117 |
tttgcaatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttc |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33618401 |
tttgcaatcccgtttttccaacagcttacagggatcaatattgtagccttttattcacccaacctctttc |
33618470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 33609126 - 33609293
Alignment:
| Q |
17 |
agaagaacttatcaagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggca |
116 |
Q |
| |
|
|||||||||||| |||| | |||| |||| ||||| || | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33609126 |
agaagaacttattaagtcaatagaacttgcaaaatcggttaaccaagagccctttaaaaccatattaaaaagggagtatcgacctcacttggtgatggca |
33609225 |
T |
|
| Q |
117 |
tttgcaatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctt |
184 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||||| || || || |||||||| |||||||| |
|
|
| T |
33609226 |
tttgcaatcccatttttccaacaacttaccgggatcaacatcgtcgctttctattcacctaacctctt |
33609293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 33588410 - 33588579
Alignment:
| Q |
17 |
agaagaacttatcaagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggca |
116 |
Q |
| |
|
||||||||| | ||||||||||||||| ||||| |||||||||||||||| |||| ||||||||| | || ||||||||||||||||||| |||||| |
|
|
| T |
33588410 |
agaagaactctttaagtggacagaaatttcgaaagcagtgcaacaagagccatttatgaccatattagagagacaatatcgacctcacttggtcatggca |
33588509 |
T |
|
| Q |
117 |
tttgcaatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttc |
186 |
Q |
| |
|
||| ||||||| ||||| |||||| ||||||||||||||||||| || || |||||||| |||||||||| |
|
|
| T |
33588510 |
ttttcaatcccattttttcaacagtttacagggatcaacattgtcgctttctattcaccaaacctctttc |
33588579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 33627516 - 33627684
Alignment:
| Q |
17 |
agaagaacttatcaagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggca |
116 |
Q |
| |
|
|||||||||||| | || ||| ||||||| |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
33627516 |
agaagaacttattaggtcaacaaaaattgcaaaatcactgcaacaagagccctttaaaaccatattcaaaagggagtatcgacctcacttggtaatggcg |
33627615 |
T |
|
| Q |
117 |
tttgcaatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctcttt |
185 |
Q |
| |
|
| |||||||||||||| ||||| ||||||||||||||||| | || || |||||||| ||||||||| |
|
|
| T |
33627616 |
atagcaatcccgttttttcaacaagttacagggatcaacattattgctttctattcacctaacctcttt |
33627684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 33595582 - 33595751
Alignment:
| Q |
17 |
agaagaacttatcaagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggca |
116 |
Q |
| |
|
||||||||| | ||||||||||||||| ||||| |||||||||||||||| |||| |||||||| | || ||||||||||||||||||| |||||| |
|
|
| T |
33595582 |
agaagaactctttaagtggacagaaatttcgaaagcagtgcaacaagagccatttatgaccatatttgagagacaatatcgacctcacttggtcatggca |
33595681 |
T |
|
| Q |
117 |
tttgcaatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttc |
186 |
Q |
| |
|
||| ||||||| ||||| |||||| ||||||||||||||||||| || || |||||||| |||||||||| |
|
|
| T |
33595682 |
ttttcaatcccattttttcaacagtttacagggatcaacattgtcgctttctattcaccaaacctctttc |
33595751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 33602713 - 33602882
Alignment:
| Q |
17 |
agaagaacttatcaagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggca |
116 |
Q |
| |
|
||||||||| | ||||||||||||||| ||||| |||||||||||||||| |||| |||||||| | || ||||||||||||||||||| |||||| |
|
|
| T |
33602713 |
agaagaactctttaagtggacagaaatttcgaaagcagtgcaacaagagccatttatgaccatatttgagagacaatatcgacctcacttggtcatggca |
33602812 |
T |
|
| Q |
117 |
tttgcaatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttc |
186 |
Q |
| |
|
||| ||||||| ||||| |||||| ||||||||||||||||||| || || |||||||| |||||||||| |
|
|
| T |
33602813 |
ttttcaatcccattttttcaacagtttacagggatcaacattgtcgctttctattcaccaaacctctttc |
33602882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 33622491 - 33622658
Alignment:
| Q |
18 |
gaagaacttatcaagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcat |
117 |
Q |
| |
|
||||||| ||| |||| ||| |||||| |||||||| || |||| ||||||||||||||| ||||||| || |||| |||||| | | ||||| | |
|
|
| T |
33622491 |
gaagaacatattaagtcaacacaaattgtaaaatcagtaaaaaaagatccctttaaaaccatactaaaaagagagtatcaacctcagattttaatggcct |
33622590 |
T |
|
| Q |
118 |
ttgcaatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctcttt |
185 |
Q |
| |
|
| |||||| ||| |||| |||| ||||||||| ||||||||| || || |||||||| ||||||||| |
|
|
| T |
33622591 |
tagcaatctcgtgtttcgaacatgttacagggaacaacattgttgctttctattcacctaacctcttt |
33622658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 33562979 - 33563045
Alignment:
| Q |
91 |
aatatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacagggatcaacat |
157 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| || ||| |||| ||||| || || ||||||||||| |
|
|
| T |
33562979 |
aatatcgacctcacttggtgatagcagttgctattccgctttttcaacaactcacggggatcaacat |
33563045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University