View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5453_high_3 (Length: 328)
Name: NF5453_high_3
Description: NF5453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5453_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 32602484 - 32602174
Alignment:
| Q |
1 |
tatatagtttcctaatcaattatatttatgatgttcagatggaatagttggaaccatttcggttgtgatataaatgaaagtttaatccgagatacaggta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32602484 |
tatatagtttcctaatcaattatatttatgatgttcagatggaatagttggaaccatttcggttgtgatataaatgaaagtttaatccgagatacaggta |
32602385 |
T |
|
| Q |
101 |
tatatgtttattatcattattatgatgttccctaagctattattttcacagtttaaatatgtttaattcaattgaagtaaacaatattgatttatcattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32602384 |
tatatgtttattatcattattatgatgttcccta-----ttatttttacagtttaaatatatttaattcaattgaagtaaacaatattgatttatcattt |
32602290 |
T |
|
| Q |
201 |
cagctgatgcgatggtgtcaaccggccttattgccctagggtacaagtttatcaatttaggtaggtggcaagtggcaactacaacgatcattgctgctac |
300 |
Q |
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|||||||||| ||||||||||| || ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32602289 |
cagctgatgcaatggtgtcaactggacttgctgccctagggtacaagtatatcaatttaggtaggtggcaagtggcaactacaacgatcattgctgctac |
32602190 |
T |
|
| Q |
301 |
tatacttactctttat |
316 |
Q |
| |
|
||||||||||||||| |
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| T |
32602189 |
catacttactctttat |
32602174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 4 - 316
Target Start/End: Complemental strand, 32592339 - 32592027
Alignment:
| Q |
4 |
atagtttcctaatcaattatatttatgatgttcagatggaatagttggaaccatttcggttgtgatataaatgaaagtttaatccgagatacaggtatat |
103 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32592339 |
atagtttcctaatcaattatatttatgattttcagatggaatagttggaaccatttcggttgtgatataaatgaaagtttaatccgagatacaggtatct |
32592240 |
T |
|
| Q |
104 |
atgtttattatcattattatgatgttccctaagctattattttcacagtttaaatatgtttaattcaattgaagtaaacaatattgatttatcatttcag |
203 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| | |||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
32592239 |
atgtttattatcattattatgatgttccctaagccattatttttacagtttagatatatgtaattcaattgatctaaactatattgatttatcatttcag |
32592140 |
T |
|
| Q |
204 |
ctgatgcgatggtgtcaaccggccttattgccctagggtacaagtttatcaatttaggtaggtggcaagtggcaactacaacgatcattgctgctactat |
303 |
Q |
| |
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||||||||||||||||||| || ||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32592139 |
ctgatgcgatggtgtcaactggacttgctgccctaggatacaagtatatcaatttaggtaggtggcaagtggcaactacaacgatcattgctgctgctat |
32592040 |
T |
|
| Q |
304 |
acttactctttat |
316 |
Q |
| |
|
||||||||||||| |
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|
| T |
32592039 |
acttactctttat |
32592027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 35124925 - 35124830
Alignment:
| Q |
13 |
taatcaattatatttatgatgttcagatggaatagttggaaccatttcggttgtgatataaatgaaagtttaatccgagatacaggtatatatgtt |
108 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35124925 |
taatcaattatacatatgatgttcagatggaatagttggaaccatttcggttgtgatattaatgaaagtttaatccgagatacaggtatatatgtt |
35124830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 34579740 - 34579652
Alignment:
| Q |
13 |
taatcaattatatttatgatgttcagatggaatagttggaaccatttcggttgtgatataaatgaaagtttaatccgagatacaggtat |
101 |
Q |
| |
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|||||||||||| ||||||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||| |||||||| |
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| T |
34579740 |
taatcaattatacatatgatgatcagatggaatagctggaaccattttggttgtgatatcaatgaaagtttaatccaagacacaggtat |
34579652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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