View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5453_high_4 (Length: 321)
Name: NF5453_high_4
Description: NF5453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5453_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 137 - 267
Target Start/End: Original strand, 39503582 - 39503710
Alignment:
| Q |
137 |
aatagttagtaatctttatgatacaccgtagactttccaagaaaaagtgatggcatatatgaaactttagattctcaacaacaaccaaataagaataata |
236 |
Q |
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| T |
39503582 |
aatagttagtaatctttctgatacaccgtagactttccaagaaaaagtgatggcatatatgaaactttagattctcaacaacaaccaaataagaat--ta |
39503679 |
T |
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| Q |
237 |
attaaaaagcaatagcatatttgtaacatta |
267 |
Q |
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| T |
39503680 |
attaaaaagcaatagcatatttgtaacatta |
39503710 |
T |
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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 39503424 - 39503490
Alignment:
| Q |
16 |
attgtagtcggtcttgagagtttgattttgtgcatgttacagaggacaaacagtgagtgacgagact |
82 |
Q |
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| T |
39503424 |
attgtagtcggccttgagagtttgattttgtgcatgttacagaggacaaacagtgagtgacgagact |
39503490 |
T |
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