View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5453_low_13 (Length: 233)
Name: NF5453_low_13
Description: NF5453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5453_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 13918805 - 13918584
Alignment:
| Q |
3 |
gccagctgtgaagctgggaccagcatggcgcggttgacagttaatgatgacccgcgccagagactggtcacaccttcctgcttcgccattctagtaatgg |
102 |
Q |
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| T |
13918805 |
gccagctgtgaagctgtgaccagcatggcgcggttcacagtcaatgatgacccgcgccagagactagtcacaccttcctgcttcgccattctggtaatgg |
13918706 |
T |
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| Q |
103 |
cgtcgacaacagatttgtagtttctctgctgagccggtggaagtctcccatcggcttgcattcgaaccatggcaacatcggcaggattaccgatagcagc |
202 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
13918705 |
cgtcaacaacagatttgtagtttctctgctgagccggtgggagtctcccatcggcttgcattcgaaccatggcaacatcggcggggttaccgatagcagc |
13918606 |
T |
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| Q |
203 |
accaaccccaccagcaataagt |
224 |
Q |
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|||||||||||||||||||||| |
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| T |
13918605 |
accaaccccaccagcaataagt |
13918584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 28830049 - 28829836
Alignment:
| Q |
1 |
atgccagctgtgaagctgggaccagcatggcgcggttgacagttaatgatgacccgcgccagagactggtcacaccttcctgcttcgccattctagtaat |
100 |
Q |
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||||||||||||| || | |||| |||||||||||| || || | ||||| |||||||| || || || || || || | |||||||| || | || |
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| T |
28830049 |
atgccagctgtgatgcggtaaccaacatggcgcggttcactgtcagagatgaaccgcgccataggctagtaactccctcgtctttcgccatcctggagat |
28829950 |
T |
|
| Q |
101 |
ggcgtcgacaacagatttgtagtttctctgctgagccggtggaagtctcccatcggcttgcattcgaaccatggcaacatcggcaggattaccgatagca |
200 |
Q |
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| T |
28829949 |
ggcgtcgacgacagatttatagtttcttctttgggccgatggaagtcttccatcggcctgcatcctaaccattgccacatcagccggattcccgacagcc |
28829850 |
T |
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| Q |
201 |
gcaccaaccccacc |
214 |
Q |
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|| |||| |||||| |
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| T |
28829849 |
gcgccaatcccacc |
28829836 |
T |
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