View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5453_low_2 (Length: 346)
Name: NF5453_low_2
Description: NF5453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5453_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 28669450 - 28669145
Alignment:
| Q |
16 |
tcatttctcaagtttcctaatatggtatcaagagccttttcccttgcgtgaaaggttgttacgatccataaccgtttttccctaaccgnnnnnnncccgt |
115 |
Q |
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| T |
28669450 |
tcatttctcaagtttcctaatatggtatcaagaaccttttcccttgcgtgaaagattgttactatccataaccgtttttcc-----------------gt |
28669368 |
T |
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| Q |
116 |
tatgtattcctctttgatcatcttcttcaatcgttttcctcatatttcgttgttgatcttcatgattctttgcattttgattgcagattctgcaacttga |
215 |
Q |
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| T |
28669367 |
tgtgtattcctctttgatcatcttcttcaatcgttttcctcatatttcgttgttgatcttcatgattctttgcattttgattgcagattctgcaacttga |
28669268 |
T |
|
| Q |
216 |
ttctcgnnnnnnnnnnnnnnnnnnnnnnnattcgattgaattctacttcaattgctcattttctcttcgttttctcgaattcagttcttattaatataat |
315 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28669267 |
ttctcgtttttcttgttattctgttttttattcgattgaattctacttcaattgctcattttctcttcgttttctcgaattcagttcttattactataat |
28669168 |
T |
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| Q |
316 |
ttgttccctttcttcttcatctc |
338 |
Q |
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| T |
28669167 |
tcgttccctttcttcttcatctc |
28669145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 11922056 - 11922132
Alignment:
| Q |
16 |
tcatttctcaagtttcctaatatggtatcaagagccttttcccttgcgtgaaaggttgttacgatccataaccgttt |
92 |
Q |
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| T |
11922056 |
tcatttctcaagtttcataatatggtatcacgtgccttttccatctcgagaaaggttgttacaatccccaaccgttt |
11922132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 11922189 - 11922236
Alignment:
| Q |
172 |
tcttcatgattctttgcattttgattgcagattctgcaacttgattctc |
220 |
Q |
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| T |
11922189 |
tcttcaagattctttgcattt-gattgcagattctgcaatctgattctc |
11922236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 30498314 - 30498379
Alignment:
| Q |
27 |
gtttcctaatatggtatcaagagccttttcccttgcgtgaaaggttgttacgatccataaccgttt |
92 |
Q |
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| T |
30498314 |
gtttcctaatatggtatcacgcgccttctcccacgcaggaaaggttgtttcgatccataacggttt |
30498379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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