View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5453_low_9 (Length: 250)
Name: NF5453_low_9
Description: NF5453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5453_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 32592580 - 32592436
Alignment:
| Q |
18 |
gcattttgtatcctcgtgttgctgaatattattgcaagtgttccatcatcttcagctgctcctttattaggaaacaacaatgtaaccaaagttgagagtt |
117 |
Q |
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| T |
32592580 |
gcattttgtatcctcgtgttgctgaatattattgcatgtgttccatcatcttcagctgctcctttattaggaaacaacaatgtaaccaaagttgagagtt |
32592481 |
T |
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| Q |
118 |
atatgttgcaaaatggacttggtcagacaccccccatggggtatg |
162 |
Q |
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| T |
32592480 |
atatgttgcaaaatggacttggtcagacacctcccatggggtatg |
32592436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 32602725 - 32602578
Alignment:
| Q |
18 |
gcattttgtatcctcgtgttgctgaatattattgcaagtgttccatcatcttcagctgctcctttattaggaaaca---acaatgtaaccaaagttgaga |
114 |
Q |
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| T |
32602725 |
gcattttgtatcctcatgttgctgaatattattgcaagtgttccatcatcttcagctgctcgattattaggaaacaacaacaatgtaaccaaaattaaga |
32602626 |
T |
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| Q |
115 |
gttatatgttgcaaaatggacttggtcagacaccccccatggggtatg |
162 |
Q |
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| T |
32602625 |
gttatatgttgcaaaatggacttggtcagacacctcccatggggtatg |
32602578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 32592431 - 32592376
Alignment:
| Q |
195 |
atccattgttcattcaaatatatccattttttcttttatgattcacacataaaaat |
250 |
Q |
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| T |
32592431 |
atccattgttcattcaaatatatccattttttcttttatgattcacacgtaaaaat |
32592376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 32602573 - 32602518
Alignment:
| Q |
195 |
atccattgttcattcaaatatatccattttttcttttatgattcacacataaaaat |
250 |
Q |
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| T |
32602573 |
atccattgttcattcaaatatatccattttttcttttatgattctcacataaaaat |
32602518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 35125111 - 35125041
Alignment:
| Q |
112 |
agagttatatgttgcaaaatggacttggtcagacaccccccatggggtatgctataccttctttatctata |
182 |
Q |
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| T |
35125111 |
agagttatttgttacaaaatggacttggtcagacacctcccatggggtatgttataccctctctatgtata |
35125041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 35125197 - 35125149
Alignment:
| Q |
47 |
tattgcaagtgttccatcatcttcagctgctcctttattaggaaacaac |
95 |
Q |
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| T |
35125197 |
tattgcaagtgttccatcatcttcagctgctcgtttattaggaaccaac |
35125149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 34581233 - 34581190
Alignment:
| Q |
47 |
tattgcaagtgttccatcatcttcagctgctcctttattaggaa |
90 |
Q |
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| T |
34581233 |
tattgcaagtattccatcatctacagctgctcgtttattaggaa |
34581190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 34581147 - 34581094
Alignment:
| Q |
112 |
agagttatatgttgcaaaatggacttggtcagacaccccccatggggtatgcta |
165 |
Q |
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|||||||||||||||||||||||||||| | || || ||||||||||| |||| |
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| T |
34581147 |
agagttatatgttgcaaaatggacttggacgtactcctcccatggggtaagcta |
34581094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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