View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5454-Insertion-1 (Length: 860)

Name: NF5454-Insertion-1
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5454-Insertion-1
NF5454-Insertion-1
[»] chr1 (7 HSPs)
chr1 (8-339)||(9772005-9772336)
chr1 (550-854)||(9771496-9771796)
chr1 (458-498)||(9771848-9771888)
chr1 (478-513)||(24124833-24124868)
chr1 (476-513)||(28039861-28039898)
chr1 (460-513)||(41362642-41362694)
chr1 (460-513)||(47961274-47961327)
[»] chr7 (5 HSPs)
chr7 (36-140)||(22656487-22656595)
chr7 (273-331)||(22660928-22660986)
chr7 (460-510)||(21105629-21105679)
chr7 (458-512)||(24099219-24099272)
chr7 (460-513)||(30397092-30397145)
[»] scaffold1160 (1 HSPs)
scaffold1160 (460-513)||(1697-1750)
[»] chr6 (3 HSPs)
chr6 (476-513)||(28046179-28046216)
chr6 (460-513)||(2617190-2617243)
chr6 (460-513)||(8629681-8629734)
[»] chr4 (1 HSPs)
chr4 (460-513)||(19908715-19908768)
[»] chr2 (5 HSPs)
chr2 (460-513)||(9383194-9383247)
chr2 (460-512)||(21497691-21497743)
chr2 (460-512)||(24581002-24581054)
chr2 (475-513)||(37320517-37320555)
chr2 (460-513)||(40967356-40967409)
[»] scaffold0118 (1 HSPs)
scaffold0118 (482-513)||(40021-40052)
[»] chr8 (3 HSPs)
chr8 (475-513)||(15316057-15316095)
chr8 (475-513)||(15496426-15496464)
chr8 (460-513)||(34420847-34420900)
[»] chr5 (3 HSPs)
chr5 (460-510)||(31198735-31198785)
chr5 (476-513)||(16133066-16133103)
chr5 (460-513)||(18391623-18391676)
[»] scaffold0334 (1 HSPs)
scaffold0334 (460-513)||(5205-5258)
[»] chr3 (3 HSPs)
chr3 (476-513)||(5702179-5702216)
chr3 (476-513)||(30200849-30200886)
chr3 (460-513)||(52508287-52508340)


Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 8 - 339
Target Start/End: Complemental strand, 9772336 - 9772005
Alignment:
Q  8 actcagacatacgtagaaatgaagttgttctaaatcaaactattattctgtaaacatgtattgtacatccagtctcgagtagtttatattcatgatggac 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9772336 actcagacatacgtagaaatgaagttgttctaaatcaaactattattctgcaaacatgtattgtacatccagtctcgagtagtttatattcatgatggac 9772237  T
Q  108 atcaaaatgtttatcaaatgccaaccagacatgtggctactcgtagtaaatatgagtcaccttgcgagtaggtcctcactaatgtcaatgttagccttaa 207  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9772236 atcaaaatgtttatcaaatgccaaccagacatgtggctacccgtagtaaatatgagtcaccttgcgagtaggtcctcactaatgtcaatgttagccttaa 9772137  T
Q  208 taactttttgagcaggcttatccattgatcaaattgaaaatgaatactagcaaaggagaagaatgagaagacatgatgaagaagatgataggagagaatg 307  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9772136 taactttttgaacaggcttatccattgatcaaattgaaaatgaatactagcaaaggagaagaatgagaagacatgatgaagaagatgataggagagaatg 9772037  T
Q  308 gtataggtgtgtatgattgattgtgattttca 339  Q
    |||||||||||||||||| |||||||||||||    
T  9772036 gtataggtgtgtatgattaattgtgattttca 9772005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 550 - 854
Target Start/End: Complemental strand, 9771796 - 9771496
Alignment:
Q  550 tgattttacgtcaaacttgtgccacttcactactagaacnnnnnnnngataaattgaggcagtttggtaaataaatattcaattagctaatataagnnnn 649  Q
    ||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||        
T  9771796 tgattttacgtcaaacttgtgccacttcactactagaa--aaaaaaagataaattgaggcagtttggtaaataaatattcaattagctaatataagtttt 9771699  T
Q  650 nnnnnnn-ggtgtcaaggacagaaaaagaagnnnnnnnnnnctcttcgtaggacttgtctaagaaaccccttttaagttgaacttgatcttttgccaaaa 748  Q
            |||||||||| |||||||||||           |||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| ||    
T  9771698 ttttttttggtgtcaaggtcagaaaaagaa-aaaaaaaaaactcttcgtag-acttgtctaagaaaccctttttaagttgaacttgatcttttaccagaa 9771601  T
Q  749 attaaatttcttaaattgacaggttttcaagggttgtttgagacttggaccgtcataatatccttgaactcctcactgatctttggggaggacccatagt 848  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | || |||||||||||||||    
T  9771600 attaaatttcttaaattgtcaggttttcaagggttgtttgagatttggaccgtcataatatccttgagctcctcactga-ccttcgggaggacccatagt 9771502  T
Q  849 cctccc 854  Q
    ||||||    
T  9771501 cctccc 9771496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 458 - 498
Target Start/End: Complemental strand, 9771888 - 9771848
Alignment:
Q  458 tatttttgtggtggtagtggttcaaacctctaaccttgcat 498  Q
    ||||||||||||||||| ||||||||||||||||||| |||    
T  9771888 tatttttgtggtggtaggggttcaaacctctaaccttacat 9771848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 513
Target Start/End: Original strand, 24124833 - 24124868
Alignment:
Q  478 ttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    |||||||||| |||||||||||||||||||||||||    
T  24124833 ttcaaacctcgaaccttgcatatattatgcattgtc 24124868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 476 - 513
Target Start/End: Original strand, 28039861 - 28039898
Alignment:
Q  476 ggttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  28039861 ggttcaaacctcagaccttgcatatattatgcattgtc 28039898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 513
Target Start/End: Complemental strand, 41362694 - 41362642
Alignment:
Q  460 tttttgtggtggtagtggttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    |||||||||||| | |||||| ||||||  ||||||||||||||||||||||||    
T  41362694 tttttgtggtggca-tggttcgaacctccgaccttgcatatattatgcattgtc 41362642  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 47961274 - 47961327
Alignment:
Q  460 tttttgtggtggtagtggttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    ||||||||||||  | | ||||||||||  ||||||||||||||||||||||||    
T  47961274 tttttgtggtggctgggtttcaaacctcggaccttgcatatattatgcattgtc 47961327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 9e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 22656487 - 22656595
Alignment:
Q  36 tctaaatcaaactattattctgtaaacatgtattgtacatcca-----gtctcgagtagtttatattcatgatggacatcaaaatgtttatcaaatgcca 130  Q
    |||||||||||||||| ||||| |||||||| ||||| |||||     ||| ||||||||||||||| ||||||||||||||||| ||||||| ||||||    
T  22656487 tctaaatcaaactattgttctgcaaacatgtcttgtagatccatgtcagtcccgagtagtttatattgatgatggacatcaaaat-tttatcagatgcca 22656585  T
Q  131 accagacatg 140  Q
    |  |||||||    
T  22656586 atgagacatg 22656595  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 273 - 331
Target Start/End: Original strand, 22660928 - 22660986
Alignment:
Q  273 agaagacatgatgaagaagatgataggagagaatggtataggtgtgtatgattgattgt 331  Q
    |||| ||||||||||||||||||||||||||||| ||||||||| ||| || |||||||    
T  22660928 agaatacatgatgaagaagatgataggagagaattgtataggtgagtaagaatgattgt 22660986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 460 - 510
Target Start/End: Complemental strand, 21105679 - 21105629
Alignment:
Q  460 tttttgtggtggtagtggttcaaacctctaaccttgcatatattatgcatt 510  Q
    ||||||||||||| | ||||| |||||| ||||||||||||||||||||||    
T  21105679 tttttgtggtggtcggggttcgaacctcgaaccttgcatatattatgcatt 21105629  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 458 - 512
Target Start/End: Original strand, 24099219 - 24099272
Alignment:
Q  458 tatttttgtggtggtagtggttcaaacctctaaccttgcatatattatgcattgt 512  Q
    ||||||||||||||| | |||||||||| | |||||| |||||||||||||||||    
T  24099219 tatttttgtggtggtcg-ggttcaaaccccgaaccttacatatattatgcattgt 24099272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 513
Target Start/End: Complemental strand, 30397145 - 30397092
Alignment:
Q  460 tttttgtggtggtagtggttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    ||||||||||||| | |||||||||| | |||||| ||||| ||||||||||||    
T  30397145 tttttgtggtggtcggggttcaaaccccgaaccttacatattttatgcattgtc 30397092  T

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Target: scaffold1160 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 1697 - 1750
Alignment:
Q  460 tttttgtggtggtagtggttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    ||||||||||||  | |||||||||||| |||||||||||| ||||||||||||    
T  1697 tttttgtggtggctggggttcaaacctcgaaccttgcatattttatgcattgtc 1750  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 476 - 513
Target Start/End: Original strand, 28046179 - 28046216
Alignment:
Q  476 ggttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    |||||||||||| |||||||||||||||||||||||||    
T  28046179 ggttcaaacctcaaaccttgcatatattatgcattgtc 28046216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 2617190 - 2617243
Alignment:
Q  460 tttttgtggtggtagtggttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    ||||||||||||  | |||| ||||||| |||||| ||||||||||||||||||    
T  2617190 tttttgtggtggccgaggtttaaacctcaaaccttacatatattatgcattgtc 2617243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 8629681 - 8629734
Alignment:
Q  460 tttttgtggtggtagtggttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    ||||||||||||| | ||||  |||| | |||||||||||||||||||||||||    
T  8629681 tttttgtggtggtcgaggtttgaaccccgaaccttgcatatattatgcattgtc 8629734  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 460 - 513
Target Start/End: Complemental strand, 19908768 - 19908715
Alignment:
Q  460 tttttgtggtggtagtggttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    ||||||||||||| | ||||| ||||||  ||||||||||||||||||||||||    
T  19908768 tttttgtggtggtcggggttcgaacctcggaccttgcatatattatgcattgtc 19908715  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 9383194 - 9383247
Alignment:
Q  460 tttttgtggtggtagtggttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    |||||||||||| || |||| ||||| | |||||||||||||||||||||||||    
T  9383194 tttttgtggtggcaggggttgaaaccccaaaccttgcatatattatgcattgtc 9383247  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 460 - 512
Target Start/End: Complemental strand, 21497743 - 21497691
Alignment:
Q  460 tttttgtggtggtagtggttcaaacctctaaccttgcatatattatgcattgt 512  Q
    ||||||||||||  | |||| ||||||| ||||||||||||||||||||||||    
T  21497743 tttttgtggtggccgaggtttaaacctcgaaccttgcatatattatgcattgt 21497691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 460 - 512
Target Start/End: Original strand, 24581002 - 24581054
Alignment:
Q  460 tttttgtggtggtagtggttcaaacctctaaccttgcatatattatgcattgt 512  Q
    ||||||||||||| | ||||  |||||| ||||||||||||||||||||||||    
T  24581002 tttttgtggtggtcggggtttgaacctcgaaccttgcatatattatgcattgt 24581054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 475 - 513
Target Start/End: Original strand, 37320517 - 37320555
Alignment:
Q  475 tggttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  37320517 tggttcgaacctcgaaccttgcatatattatgcattgtc 37320555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 40967356 - 40967409
Alignment:
Q  460 tttttgtggtggtagtggttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    |||||||| |||| | ||||  |||||| |||||||||||||||||||||||||    
T  40967356 tttttgtgatggtcgaggtttgaacctcaaaccttgcatatattatgcattgtc 40967409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 482 - 513
Target Start/End: Complemental strand, 40052 - 40021
Alignment:
Q  482 aacctctaaccttgcatatattatgcattgtc 513  Q
    ||||||||||||||||||||||||||||||||    
T  40052 aacctctaaccttgcatatattatgcattgtc 40021  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 475 - 513
Target Start/End: Original strand, 15316057 - 15316095
Alignment:
Q  475 tggttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  15316057 tggttcaaacctcgaaccttgcatatattatccattgtc 15316095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 475 - 513
Target Start/End: Original strand, 15496426 - 15496464
Alignment:
Q  475 tggttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  15496426 tggttcaaacctcgaaccttgcatatattatccattgtc 15496464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 34420847 - 34420900
Alignment:
Q  460 tttttgtggtggtagtggttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    ||||||||||||| | ||||  |||||| |||||||||||| ||||||||||||    
T  34420847 tttttgtggtggtcgaggtttgaacctcaaaccttgcatattttatgcattgtc 34420900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 460 - 510
Target Start/End: Complemental strand, 31198785 - 31198735
Alignment:
Q  460 tttttgtggtggtagtggttcaaacctctaaccttgcatatattatgcatt 510  Q
    ||||||||||||| | |||||||||| || || ||||||||||||||||||    
T  31198785 tttttgtggtggttggggttcaaacccctcacgttgcatatattatgcatt 31198735  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 476 - 513
Target Start/End: Original strand, 16133066 - 16133103
Alignment:
Q  476 ggttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  16133066 ggtttaaacctctgaccttgcatatattatgcattgtc 16133103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 513
Target Start/End: Complemental strand, 18391676 - 18391623
Alignment:
Q  460 tttttgtggtggtagtggttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    ||||||||||||| | ||||| ||||||  ||||||||||| ||||||||||||    
T  18391676 tttttgtggtggtcgaggttcgaacctcggaccttgcatattttatgcattgtc 18391623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 513
Target Start/End: Complemental strand, 5258 - 5205
Alignment:
Q  460 tttttgtggtggtagtggttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    ||||||||||||| | ||||  ||||||  ||||||||||||||||||||||||    
T  5258 tttttgtggtggttggggtttgaacctcagaccttgcatatattatgcattgtc 5205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 476 - 513
Target Start/End: Original strand, 5702179 - 5702216
Alignment:
Q  476 ggttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  5702179 ggttcgaacctcaaaccttgcatatattatgcattgtc 5702216  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 476 - 513
Target Start/End: Complemental strand, 30200886 - 30200849
Alignment:
Q  476 ggttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  30200886 ggttcgaacctcaaaccttgcatatattatgcattgtc 30200849  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 513
Target Start/End: Complemental strand, 52508340 - 52508287
Alignment:
Q  460 tttttgtggtggtagtggttcaaacctctaaccttgcatatattatgcattgtc 513  Q
    ||||||||||||  ||| ||||||||   |||||||||||||||||||||||||    
T  52508340 tttttgtggtggccgtgattcaaaccctaaaccttgcatatattatgcattgtc 52508287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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