View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5454-Insertion-11 (Length: 640)

Name: NF5454-Insertion-11
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5454-Insertion-11
NF5454-Insertion-11
[»] chr1 (2 HSPs)
chr1 (8-353)||(26968789-26969134)
chr1 (308-640)||(26969122-26969454)


Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 8 - 353
Target Start/End: Original strand, 26968789 - 26969134
Alignment:
Q  8 ctttcagcctctccgccaccgctcctgttcgagtatcctccgttctgatcaccccctcatttccacgcctccaagtttcctctccaaatcctttacgtcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26968789 ctttcagcctctccgccaccgctcctgttcgagtatcctccgttctgatcaccccctcatttccacgcctccaagtttcctctccaaatcctttacgtcc 26968888  T
Q  108 ataatttccactttccattttcctccctgcttctttatctgcttcactcaacatttcctgcattatccatgccaaaattccacaaccactgatcaataaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  26968889 ataatttccactttccattttcctccctgcttctttatctgcttcactcaacatttcctgcattatccatgcaaaaattccacaaccactaatcaataaa 26968988  T
Q  208 tatctcaaacatcaaaaacatatactaccataaattcaaatttgttaccttggtcttgtcttttgcctctactgtcttttgcttagcagcctcagtggtt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |  ||     
T  26968989 tatctcaaacatcaaaaacatatactaccataaattcaaatttgttaccttggtcttgtcttttgcctctactgtcttttgtttagcagcttctgctgtc 26969088  T
Q  308 tctgcagttttctgtttagcagcttccgctgtctctgcagttttct 353  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  26969089 tctgcagttttctgtttagcagcttctgctgtctctgcagttttct 26969134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 308 - 640
Target Start/End: Original strand, 26969122 - 26969454
Alignment:
Q  308 tctgcagttttctgtttagcagcttccgctgtctctgcagttttctccttagcttcctctttcttgtcacccaagtaacccatagcccgtttcgccgcat 407  Q
    |||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26969122 tctgcagttttctgtttagcagcttctgctgtctctgcagttttctgtttagcttcctctttcttgtcacccaagtaacccatagcccgtttcgccgcat 26969221  T
Q  408 caacagcagagtctttcatctcaccaatcttccatgctgtattatccttcccttccttcgccttctcagctgtataatccttatactcacccatcttatt 507  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26969222 caacagcagagtccttcatctcaccaatcttccacgctgtattatccttcccttccttcgccttctcagctgtataatccttatactcacccatcttatt 26969321  T
Q  508 cagggtggcatctttcccttctttcgccttctcagccgtataatccttatactcacccatcttattcatggtagcatcttttccttcctttgccttttcc 607  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26969322 catggtggcatctttcccttctttcgccttctcagccgtataatccttatactcacccatcttattcatggtagcatcttttccttcctttgccttttcc 26969421  T
Q  608 gcagcatagtctttgtactccccagctttgtcc 640  Q
    |||||||||||||||||||||||||||||||||    
T  26969422 gcagcatagtctttgtactccccagctttgtcc 26969454  T

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