View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5454-Insertion-3 (Length: 805)
Name: NF5454-Insertion-3
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5454-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 428 - 794
Target Start/End: Complemental strand, 45641565 - 45641196
Alignment:
| Q |
428 |
acatgaagctggcttcaggcatctatcttcagtctttt---gcgcctgttactaatggatattcttaaccaagatcttcgtttccttcaacgaaaaacaa |
524 |
Q |
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| T |
45641565 |
acataaagctggctttaggcatctatcttcagtctttttttgtgcctgttactaatggatattcttaaccaagatcttcgtttccttcaatgaaaaacaa |
45641466 |
T |
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| Q |
525 |
tttcgctttatccatgaaaatgttgccacgtccactatatgcagcatgtttggtgagaacaatagctagtatgcaaacgccgttgtgacgcattattagg |
624 |
Q |
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| T |
45641465 |
tttcgctttatccatgaaaatgttgccacgtccactatatgcagcatgtttagtgagaacaatagctagtatgcaaacgccgttgtgacacattagtagg |
45641366 |
T |
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| Q |
625 |
aagtgcatacttcaatgcttttcatacatcatcaatcgtttaaggattatcaggaatttcagactcttgcgccctctctcgtgtcatctcaaatctcaat |
724 |
Q |
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| T |
45641365 |
aagtgcatacttcaatgcttttcatacatcatcaaccgtttaaggattatcaggaatttcagactcttgcgccctctctcgtgtcatctcaaatctcaat |
45641266 |
T |
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| Q |
725 |
ccagtaacacttcaagccaatcctcgggaattcccattgaaaaccctttgattattccaagcatccagag |
794 |
Q |
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| T |
45641265 |
ccagtaacacttcaagccaatcctcgggaattccccttgaaaaccctttgattattccaagcagccagag |
45641196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 32 - 285
Target Start/End: Complemental strand, 45642078 - 45641825
Alignment:
| Q |
32 |
ctctttgcatggaatcagtaagtgtataccaatgaagatatctctaattgggtcagcaagattctatcctagtcaccgtggacacgtcagcaaaaacaca |
131 |
Q |
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| T |
45642078 |
ctctttgcatggaatcagtaagtgtataccaatcaagatatctttaattgggtcagcaaaattctgtcctagtcaccgtggacatgtcagcaaaaacaca |
45641979 |
T |
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| Q |
132 |
ccacatcagcaagaaaatgacctcaaggccaaattaaaaattattagtagatgccgagtttgtttgaaatgattagtaatcaaatggactaaaattcaag |
231 |
Q |
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| T |
45641978 |
ccacatcagcaagaaaatgacctcagggccaaattaaaaattattagtagctgccgagtttgtttgaaatgattagtaattaaatggactaaaattcaag |
45641879 |
T |
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| Q |
232 |
tgacccccatttgcagagacattttagatatttaagcctcgttactaatgatga |
285 |
Q |
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| T |
45641878 |
tgacccccatttgcagagacattttagatatttaagcctcgttactaatgatga |
45641825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 428 - 787
Target Start/End: Complemental strand, 45648026 - 45647674
Alignment:
| Q |
428 |
acatgaagctggcttcaggcatctatcttcagtcttttgcgcctgttactaatggatattcttaaccaagatcttcgtttccttc----aacgaaaaaca |
523 |
Q |
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| T |
45648026 |
acatgaagctggctttaggcatctttcttctgt-------gcctgttaccaatggacatcttcaatcaagatctccgtttccttcttacaacgaaaaaca |
45647934 |
T |
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| Q |
524 |
atttcgctttatccatgaaaatgttgccacgtccactatatgcagcatgtttggtgagaacaatagctagtatgcaaacgccgttgtg-acgcattatta |
622 |
Q |
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| T |
45647933 |
atttccatttcttcatgaaaatgttgccacatccactacaggcagtaagttcagtgaaaacaatagccattacgcgcatgccattggctacgcctcatta |
45647834 |
T |
|
| Q |
623 |
ggaagtgcatacttcaatgcttttcatacatcatcaatcgtttaaggattatcaggaatttcagactcttgcgccctctctcgtgtcatctcaaatctca |
722 |
Q |
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| T |
45647833 |
ggaaatgaagacttcaatgtttttcataccgcaccaagcattcaaggattatcaggaatttcagactcttgtgctctctctctt-----ctgtcatctca |
45647739 |
T |
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| Q |
723 |
atccagtaacacttcaagccaatcctcgggaattcccattgaaaaccctttgattattccaagca |
787 |
Q |
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| T |
45647738 |
atccaataacacttcaagccagtcctcggaaattccctttgataaccctttggttattccaagca |
45647674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 380 - 429
Target Start/End: Complemental strand, 45641721 - 45641672
Alignment:
| Q |
380 |
attgtgcaaatgttgctagatatgattagtgacatttttcatgatggtac |
429 |
Q |
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| T |
45641721 |
attgtgcaaatgttactagatataattagtaacatttttcatgatggtac |
45641672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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