View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5454-Insertion-4 (Length: 785)
Name: NF5454-Insertion-4
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5454-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 593; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 12 - 761
Target Start/End: Original strand, 41885432 - 41886176
Alignment:
| Q |
12 |
tctctatctctaactttctacgtcaatcatcatccacttca-gcaatccctctttttcacatgaccaccac-gatgtcaatacttccaaagatttcgaga |
109 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
41885432 |
tctctctctctaactttctacgtcaatcatcatccacttcatgcaatccctctttttcacatgaccaccaccgatgtcaatactttcaaagatttcgaga |
41885531 |
T |
|
| Q |
110 |
aagtgatgagtattcttggccacggcaacacaattatttcagctcttaataccctagacttaaccactctacttcaacaacattaaaacctcttgtcaaa |
209 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41885532 |
aagtgatgagtatttttggccacggcaacacaattatttcagctcttaataccctagacttaaccactctacttcaacaacattaaaacctcttgtcaaa |
41885631 |
T |
|
| Q |
210 |
ttaaattagttcaaaccccaaatgttccacctcataatcttattcactttgtaagatgtgcttggaagaaaaagaagtacctcgttagtacccactgtac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41885632 |
ttaaattagttcaaaccccaaatgttccacctcataattttattcactttgtaagatgtgcttggaagaaaaagaagtacctcgttagtatccactgtac |
41885731 |
T |
|
| Q |
310 |
tggaatcccttgtttcatcaatatgctctaatgttcactctcaatatcatgcttaactaagcaagaattgtatactttttcctgtgggatttgcttaaga |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41885732 |
tggaatcccttgtttcatcaatatgctctaatgttcactctcaatatcatgcttaactaagcaagaattgtatactttttcctgtgggatttgcttaaga |
41885831 |
T |
|
| Q |
410 |
ctacaggccattatcagaccggccttcttaacgctcggattttaaataaactaatagaattcttctcaattatgggggcgagaagggaaggctgcactcg |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| || |
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| T |
41885832 |
ctacaggccattatcagaccggccttcttaacgctcggattctaaataaactaatagaattcttctcaattat-ggggcgagaagggaaagctgcacacg |
41885930 |
T |
|
| Q |
510 |
atgtttttcataaatttggaggcttttcaatgtgagccaaaatcaagatacatattactttacagtacaagggtgtagtgatgatatgatccaccaaacc |
609 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
41885931 |
atgtttttcataaattt-gaggcttttcaatgtgagcc-aaatcaagatacatattactttacagtacaa-ggagtagtgatgatatgatccaccaaact |
41886027 |
T |
|
| Q |
610 |
gcttctatctgttaaaagatgatgttactgcttccttgagaattgggatgctggatggatgatggtggcgacttttctaaaatgattccttnnnnnnnnt |
709 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||| | |
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| T |
41886028 |
gcttctatctgttaaaagatgatgttactacttccttgggaattgggatgctg--ctgatgatggtggcaacttttctaaaatgattccttaaaaaaaat |
41886125 |
T |
|
| Q |
710 |
gatttctcctctaaaatacgtgagtacttaacctctaaagtagcttcacaag |
761 |
Q |
| |
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|||||||||||| |||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
41886126 |
gatttctcctct-aaatacctgagtacttaacctctaaaatagcttcacaag |
41886176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 364 - 573
Target Start/End: Complemental strand, 38605957 - 38605752
Alignment:
| Q |
364 |
aactaagcaagaattgtatactttttcctgtgggatttgcttaagactacaggccattatcagaccggccttcttaacgctcggattttaaataaactaa |
463 |
Q |
| |
|
||||||| |||||| |||||||||| |||||||||||||||||| || ||||||||||| ||||||||||||||| | | ||| | ||| | || | |
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| T |
38605957 |
aactaaggaagaatgacatactttttc-tgtgggatttgcttaagaatattggccattatcaaaccggccttcttaacccacccattctcaatcacctca |
38605859 |
T |
|
| Q |
464 |
tagaattcttctcaattatgggggcgagaagggaaggctgcactcgatgtttttcataaatttggaggcttttcaatgtgagccaaaatcaagatacata |
563 |
Q |
| |
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|| |||||||||||||||| || |||||||| ||| ||||||| || |||||||||| ||| |||| |||||||||| ||| ||||||||| ||||| |
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| T |
38605858 |
tacaattcttctcaattat-aggtcgagaaggcaagtctgcacttgaagtttttcatatgttt-gaggtctttcaatgtgtgcc-aaatcaagacacata |
38605762 |
T |
|
| Q |
564 |
ttactttaca |
573 |
Q |
| |
|
|||||||||| |
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|
| T |
38605761 |
ttactttaca |
38605752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 492 - 573
Target Start/End: Complemental strand, 40180635 - 40180556
Alignment:
| Q |
492 |
aagggaaggctgcactcgatgtttttcataaatttggaggcttttcaatgtgagccaaaatcaagatacatattactttaca |
573 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||| |||||||||| ||| |||||||||||||||| ||||||| |
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|
| T |
40180635 |
aagggaaggctgcacttgatgtttttcataaattt-gaggtctttcaatgtgtgcc-aaatcaagatacatatatctttaca |
40180556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 454 - 573
Target Start/End: Complemental strand, 40181387 - 40181271
Alignment:
| Q |
454 |
aataaactaatagaattcttctcaattatgggggcgagaagggaaggctgcactcgatgtttttcataaatttggaggcttttcaatgtgagccaaaatc |
553 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||||| | |||| ||||| ||||| |||||||||||||| |||| | | |||||||||| |||||| || |
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|
| T |
40181387 |
aataaactcatagaatccttctcagttatggggcagc-aaggaaaggcagcacttgatgtttttcataattttg-acgtatttcaatgtgtgccaaa-tc |
40181291 |
T |
|
| Q |
554 |
aagatacatattactttaca |
573 |
Q |
| |
|
||||||||||||||| |||| |
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|
| T |
40181290 |
aagatacatattactataca |
40181271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 38606125 - 38606068
Alignment:
| Q |
195 |
aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataatcttat |
252 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| || ||||||| || ||||| |
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|
| T |
38606125 |
aaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttat |
38606068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 40181645 - 40181588
Alignment:
| Q |
195 |
aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataatcttat |
252 |
Q |
| |
|
||||||||||||||| |||||||| | |||||| | | ||||||||||| |||||||| |
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|
| T |
40181645 |
aaacctcttgtcaaactaaattagctgaaaccctagaagttccacctcagaatcttat |
40181588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 195 - 345
Target Start/End: Original strand, 44459281 - 44459430
Alignment:
| Q |
195 |
aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataatcttattcactttgtaagatgtgcttggaagaaaaagaagtacctcgt |
294 |
Q |
| |
|
||||||||||||||| |||||| ||| || ||||||| |||| ||||||||||||||| ||||| ||| | | ||||||||| || ||| ||||| | |
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|
| T |
44459281 |
aaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaaggacctcat |
44459380 |
T |
|
| Q |
295 |
tagtacccactgtactggaatcccttgtttcatcaatatgctctaatgttc |
345 |
Q |
| |
|
| ||||| |||| ||||||||||||||||||||||||||||||| ||||| |
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|
| T |
44459381 |
cactaccc-ctgttctggaatcccttgtttcatcaatatgctctactgttc |
44459430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 195 - 345
Target Start/End: Original strand, 44466814 - 44466963
Alignment:
| Q |
195 |
aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataatcttattcactttgtaagatgtgcttggaagaaaaagaagtacctcgt |
294 |
Q |
| |
|
||||||||||||||| |||||| ||| || ||||||| |||| ||||||||||||||| ||||| ||| | | ||||||||| || ||| ||||| | |
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|
| T |
44466814 |
aaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaaggacctcat |
44466913 |
T |
|
| Q |
295 |
tagtacccactgtactggaatcccttgtttcatcaatatgctctaatgttc |
345 |
Q |
| |
|
| ||||| |||| ||||||||||||||||||||||||||||||| ||||| |
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|
| T |
44466914 |
cactaccc-ctgttctggaatcccttgtttcatcaatatgctctactgttc |
44466963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 572
Target Start/End: Original strand, 44459552 - 44459650
Alignment:
| Q |
471 |
cttctcaattatgggggcgagaagggaaggctgcactcgatgtttttcataaatttggaggcttttcaatgtgagccaaaatcaagatacatattacttt |
570 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||||| || |||||||||| |||| |||| ||||| |||| |||||| ||| ||||||||||||||| |
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| T |
44459552 |
cttctcaattatgggg-cgagaaggtaaatctgcacttgaagtttttcatatgtttg-aggcctttcagtgtgtgccaaa-tcacgatacatattacttt |
44459648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 572
Target Start/End: Original strand, 44467085 - 44467183
Alignment:
| Q |
471 |
cttctcaattatgggggcgagaagggaaggctgcactcgatgtttttcataaatttggaggcttttcaatgtgagccaaaatcaagatacatattacttt |
570 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||||| || |||||||||| |||| |||| ||||| |||| |||||| ||| ||||||||||||||| |
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| T |
44467085 |
cttctcaattatgggg-cgagaaggtaaatctgcacttgaagtttttcatatgtttg-aggcctttcagtgtgtgccaaa-tcacgatacatattacttt |
44467181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 195 - 335
Target Start/End: Original strand, 46358852 - 46358991
Alignment:
| Q |
195 |
aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataatcttattcactttgtaagatgtgcttggaagaaaaagaagtacctcgt |
294 |
Q |
| |
|
||||||||||||||| |||||| ||| || ||||||| |||| ||||||||||||||| ||||| ||| | | ||||||||| || ||| ||||| | |
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|
| T |
46358852 |
aaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaaggacctcat |
46358951 |
T |
|
| Q |
295 |
tagtacccactgtactggaatcccttgtttcatcaatatgc |
335 |
Q |
| |
|
| ||||| |||| |||||||||||||||||| ||||||| |
|
|
| T |
46358952 |
cactaccc-ctgttctggaatcccttgtttcagaaatatgc |
46358991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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