View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5454-Insertion-5 (Length: 505)
Name: NF5454-Insertion-5
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5454-Insertion-5 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 8 - 505
Target Start/End: Complemental strand, 4488112 - 4487615
Alignment:
| Q |
8 |
ccatataggtattatcccatcaatggaacctataatgatttggttcagcttgtctataacaaggtatcaaatctatcttttcttctctttgaaatgaaat |
107 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4488112 |
ccatatagttattatcccatcgatggaacctataatgatttggttcagcttgtctataacaaggtatcaaatctatcttttcttctctttgaaatgaaat |
4488013 |
T |
|
| Q |
108 |
gcttaattttggtttttatttgattatcatcctcctccctatcaactcaatactaggctattctgtcatgatgtgttcaatcacagaggagctctcaaat |
207 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4488012 |
gcttaattttggtttctatttgattatcatcctcctccctatcaactcaatactagtcctttctgtgatgatgtgttcaatcacagaggagctctcaaat |
4487913 |
T |
|
| Q |
208 |
aagtttataattagcaattcggaatatttaacaacattcgctaaatgcaactttttgagaataaatatgtttttgctatattgatttggaactgttgttt |
307 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4487912 |
aagtttataattagcaatttggaatatttaataacttgcactaaatgcaactttttgagaataaatatgtttttgctatattgatttggaattgttgttt |
4487813 |
T |
|
| Q |
308 |
atgtgtggctaaacaatgatggaagacttatgatgctgttgttggggacatgaccataatagaggaaagattgccgtatgtggattttacagtgccatat |
407 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4487812 |
atatgtggctaaacaatgatggaagacttatgatgctgttgttggggacatgaccataatagaggaaaggttgccgtatgtggattttacagtgccatat |
4487713 |
T |
|
| Q |
408 |
gtagaatcaggattgtcaatgatagttccgatgaagcctggagagtcagcatggatgtttatgaagccatttaccttggaattgtggctggtgacagg |
505 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
4487712 |
gcagaatcaggattgtcaatgatagttccgatgaagcctggagagtcagcatggatgtttatgaagccatttaccttggaattatggctggttacagg |
4487615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 302 - 498
Target Start/End: Complemental strand, 4482839 - 4482643
Alignment:
| Q |
302 |
ttgtttatgtgtggctaaacaatgatggaagacttatgatgctgttgttggggacatgaccataatagaggaaagattgccgtatgtggattttacagtg |
401 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||| || ||| |||||||||||| | |||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
4482839 |
ttgtttatgtttggttaaacaatgatggaagacttacgacgcttttgttggggacacggccataatagaggaaagattgaggtatgtggattttacattg |
4482740 |
T |
|
| Q |
402 |
ccatatgtagaatcaggattgtcaatgatagttccgatgaagcctggagagtcagcatggatgtttatgaagccatttaccttggaattgtggctgg |
498 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||| ||||| | | ||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4482739 |
ccatatgcagaatcaggattgtcgatgatagttccattgaagacggaagattcagcatggatgtttatgaagccatttacctgggaattgtggctgg |
4482643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 4483140 - 4483001
Alignment:
| Q |
8 |
ccatataggtattatcccatcaatggaacctataatgatttggttcagcttgtctataacaaggtatcaaatctatcttttcttctctttgaaatgaaat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4483140 |
ccatataggtattatcccatcaatggaacctataatgatatggttcagcttgtctataacaaggtatcaaatctatcttt-----tctttgaaatgaaat |
4483046 |
T |
|
| Q |
108 |
gcttaattttggtttttatttgattatcatcctcctccctatcaa |
152 |
Q |
| |
|
| || |||||||||| ||||| |||||||| ||| ||||||||| |
|
|
| T |
4483045 |
gttttattttggtttctattttattatcattatcccccctatcaa |
4483001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 331 - 475
Target Start/End: Original strand, 34606351 - 34606495
Alignment:
| Q |
331 |
agacttatgatgctgttgttggggacatgaccataatagaggaaagattgccgtatgtggattttacagtgccatatgtagaatcaggattgtcaatgat |
430 |
Q |
| |
|
|||||||||| | ||||||||| |||||||||||| | | || ||||||| ||||| |||||||| |||||||||| ||| ||||||||||| ||||| |
|
|
| T |
34606351 |
agacttatgacggtgttgttggcgacatgaccatactggcagagagattgcaatatgtagattttactgtgccatatgcagagtcaggattgtcgatgat |
34606450 |
T |
|
| Q |
431 |
agttccgatgaagcctggagagtcagcatggatgtttatgaagcc |
475 |
Q |
| |
|
|||| || |||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
34606451 |
agttacggagaagtctgaagaatcagcatggatgtttatgaagcc |
34606495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 34606015 - 34606071
Alignment:
| Q |
17 |
tattatcccatcaatggaacctataatgatttggttcagcttgtctataacaaggta |
73 |
Q |
| |
|
|||||||||||||| | ||||||||||||| ||||||| ||||| |||||||||||| |
|
|
| T |
34606015 |
tattatcccatcaacgcaacctataatgatctggttcaacttgtttataacaaggta |
34606071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University