View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5454-Insertion-6 (Length: 490)
Name: NF5454-Insertion-6
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5454-Insertion-6 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 7 - 490
Target Start/End: Original strand, 42518529 - 42519007
Alignment:
| Q |
7 |
atcgccatccttccccgttcctcatctttgcnnnnnnntaattgaggatgttggccacaaaaatgcctatagttattgccaattggaacatcatgttaag |
106 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42518529 |
atcgccatccttccccgttcttcatctttgcaaaaaaataattgaggatgttggccacaaaaatgcctatagttattgccaattggaacatcatgttaag |
42518628 |
T |
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| Q |
107 |
agctcctctatacttgtagggagcaacttcagacatatagattggcacggactgttgtaaaaaa-tacgcaagattagtaaactacctaaataataaatc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
42518629 |
agctcctctatacttgtagggagcaacttcagacatatagattggcacggactgttgtaaaaaaatatgcaagattagtaaactacctaaataataaatc |
42518728 |
T |
|
| Q |
206 |
agttaaaatatatataacaatatgagtaattaacatttgtcaaaaaagaaaagagtagttaacaatttacgcacacaacttaatttcgtgacatatttta |
305 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42518729 |
agttgaactatatataacaatatgagtaattaacatttgtcaaaaaagaaaagagtagttaacaatttacgcacacaacttaatttcgtgacatatttta |
42518828 |
T |
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| Q |
306 |
ttttaaacagtaaagtagtaccaaaaacataaaattgaggactaatttacccaaccagagactgttatgctatccttgcannnnnnnctccatgttttat |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
42518829 |
ttttaaacagtaaagtagtaccaaaaacataaaattgaggactaatttacccaaccagagactgttatggtatccttgcatttttt--tccatgttt--- |
42518923 |
T |
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| Q |
406 |
atatttttaatccaagtgtttattcattaaaaactaaccacataatatttttacctggttagcacatcctattccaaaaccaagc |
490 |
Q |
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| T |
42518924 |
-tatttttaatctaagtgtttattcattaaaaattaaccacataatatttttacctggttagcacatcctattccaaaaccaagc |
42519007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 1240209 - 1240525
Alignment:
| Q |
9 |
cgccatccttccccgttcctcatctttgcnnnnnnntaattgaggatgttggccacaaaaatgcctatagttattgccaattggaacatcatgttaagag |
108 |
Q |
| |
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|||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1240209 |
cgccatccttccccgttcttcatgtttgcaaaaaaataattgaggatgttggccacaaaaatgcctatagttattgacaattggaacatcatgttaagag |
1240308 |
T |
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| Q |
109 |
ctcctctatacttgtagggagcaacttcagacatatagattggcacggactgttgtaaaaaatacgcaagattagtaaactacctaaataataaatcagt |
208 |
Q |
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||||||||||||||||||||||||| || |||| |||||||||||| ||||||| ||||||| | |||| ||||||||||||| |||||||||||| ||| |
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| T |
1240309 |
ctcctctatacttgtagggagcaacctcggacagatagattggcacagactgttataaaaaaaatgcaacattagtaaactacttaaataataaataagt |
1240408 |
T |
|
| Q |
209 |
taaaatatatataacaatatgagtaattaacatttgtcaaaaaagaaaagagtagttaacaatttacgcacacaacttaatttcgtgacatattttattt |
308 |
Q |
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| T |
1240409 |
tgaactataaataacagtataagtaattaacatttgtcacaca--caaaaagtacttaacaatttatgcacacagcttaatatcatgagatattttattt |
1240506 |
T |
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| Q |
309 |
taaacagtaaagtagtacc |
327 |
Q |
| |
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|| ||||||||||||||| |
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| T |
1240507 |
caatcagtaaagtagtacc |
1240525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 42551487 - 42551379
Alignment:
| Q |
46 |
aattgaggatgttggccacaaaaatgcctatagttattgccaattggaacatcatgttaagagctcctctatacttgtagggagcaacttcagacatata |
145 |
Q |
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| T |
42551487 |
aattgaggatattagccacaaagatgcctatagtgattgccaattgaaacatcatattaagagctcctctgtaattgtatggagcaacttcagacacgta |
42551388 |
T |
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| Q |
146 |
gattggcac |
154 |
Q |
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|||||||| |
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| T |
42551387 |
tattggcac |
42551379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 412 - 490
Target Start/End: Original strand, 1240709 - 1240786
Alignment:
| Q |
412 |
ttaatccaagtgtttattcattaaaaactaaccacataatatttttacctggttagcacatcctattccaaaaccaagc |
490 |
Q |
| |
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|||||| ||| ||||||||||||| || | ||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
1240709 |
ttaatctaagagtttattcattaagaattgaccacatgtt-tttttacctggttagcacatcctattccaaaaccaagc |
1240786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 54 - 327
Target Start/End: Original strand, 41971884 - 41972157
Alignment:
| Q |
54 |
atgttggccacaaaaatgcctatagttattgccaattggaacatcatgttaagagctcctctatacttgtagggagcaacttcagacatatagattggca |
153 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
41971884 |
atgttggccacaaaaatgcctatagttattgacaattggaacatcatgttaagagctcctctatacttgtagggagcaacctcagacagatagattggca |
41971983 |
T |
|
| Q |
154 |
cggactgttgt--aaaaaatacgcaagattagtaaactacctaaataataaatcagttaaaatatatataacaatatgagtaattaacatttgtcaaaaa |
251 |
Q |
| |
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| ||||||| | |||||| | |||| ||||||||||||| |||||||||||| |||| || ||| |||||| ||| |||||||||||||||||| | | |
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| T |
41971984 |
cagactgttataaaaaaaaaatgcaacattagtaaactacttaaataataaataagttgaactattaataacagtataagtaattaacatttgtcacaca |
41972083 |
T |
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| Q |
252 |
agaaaagagtagttaacaatttacgcacacaacttaatttcgtgacatattttattttaaacagtaaagtagtacc |
327 |
Q |
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||| |||| ||||||||||| |||||||||||||| || ||| ||||||||||| || ||||||||||||||| |
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| T |
41972084 |
--caaaaagtacttaacaatttatgcacacaacttaatatcatgagatattttatttcaatcagtaaagtagtacc |
41972157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 18234724 - 18234830
Alignment:
| Q |
48 |
ttgaggatgttggccacaaaaatgcctatagttattgccaattggaacatcatgttaagagctcctctatacttgtagggagcaacttcagacatataga |
147 |
Q |
| |
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||||| || ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||| | ||| | |
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| T |
18234724 |
ttgagaatattggccacaaagatgcctattgtgattgccaattggaacatcatgttaagagctcctctatacttatacggagccacctcagaaacataaa |
18234823 |
T |
|
| Q |
148 |
ttggcac |
154 |
Q |
| |
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||||||| |
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| T |
18234824 |
ttggcac |
18234830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 412 - 490
Target Start/End: Original strand, 41972342 - 41972419
Alignment:
| Q |
412 |
ttaatccaagtgtttattcattaaaaactaaccacataatatttttacctggttagcacatcctattccaaaaccaagc |
490 |
Q |
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|||||| ||| ||||||||||||| || ||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
41972342 |
ttaatctaagagtttattcattaagaattaaccacatgtt-tttttacctggttagcacatcctattccaaaaccaagc |
41972419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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