View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5454-Insertion-7 (Length: 460)
Name: NF5454-Insertion-7
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5454-Insertion-7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 331 - 460
Target Start/End: Original strand, 28559072 - 28559201
Alignment:
| Q |
331 |
ctatgcaccaagaataaggtcatcagtggaagtcaatgcttatgtacgtaagatcatctgtaccaagcatctgattttagtgtaacattgtttttgcaca |
430 |
Q |
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| T |
28559072 |
ctatgcaccaagaataaggtcatccgtggaagtcaatgcttatgtacgtaagatcatttgtactaatcatctgattctagtgtaacatcgttgttgcaca |
28559171 |
T |
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| Q |
431 |
caatggctagtatctcaaagaagaaaagtt |
460 |
Q |
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| T |
28559172 |
caatggctagtatgtgaaataaggaaagtt |
28559201 |
T |
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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 255 - 376
Target Start/End: Complemental strand, 11767554 - 11767433
Alignment:
| Q |
255 |
ctaagtgtttcttcacatgctaagtattatgaagctctggaccttgtttagctcagtgtcatagataaaggcaaagctatgcaccaagaataaggtcatc |
354 |
Q |
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| T |
11767554 |
ctaattgttgcttcacatgctaagtattttgaagctctggaccttattgagttcagtgtcatagataaaggcagagctctggatcaagaataaggtcata |
11767455 |
T |
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| Q |
355 |
agtggaagtcaatgcttatgta |
376 |
Q |
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| T |
11767454 |
tgtggaagtcaattcttatgta |
11767433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 376
Target Start/End: Complemental strand, 12796897 - 12796796
Alignment:
| Q |
275 |
taagtattatgaagctctggaccttgtttagctcagtgtcatagataaaggcaaagctatgcaccaagaataaggtcatcagtggaagtcaatgcttatg |
374 |
Q |
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| T |
12796897 |
taagtatttagaagctctgaaacttaattagcaaagtgtcataaataaaggcaaagctttgcaccaagattaaggttatctgtgaaagtcaattctaatg |
12796798 |
T |
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| Q |
375 |
ta |
376 |
Q |
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| T |
12796797 |
ta |
12796796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 273 - 368
Target Start/End: Original strand, 26656121 - 26656217
Alignment:
| Q |
273 |
gctaagtattatg-aagctctggaccttgtttagctcagtgtcatagataaaggcaaagctatgcaccaagaataaggtcatcagtggaagtcaatg |
368 |
Q |
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| T |
26656121 |
gctaagtattttggaagctctcgaccttgttgatcttagtgtcatagataaaggcaaaactatatgccaagaataaggtcaattgtggaagtcaatg |
26656217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 368
Target Start/End: Original strand, 6103974 - 6104045
Alignment:
| Q |
297 |
cttgtttagctcagtgtcatagataaaggcaaagctatgcaccaagaataaggtcatcagtggaagtcaatg |
368 |
Q |
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| T |
6103974 |
cttgttgagctcaatgtcatagacaaaggcaaagctcttcaccaaggataaggtcaagtgtggaagtcaatg |
6104045 |
T |
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