View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5454-Insertion-8 (Length: 438)
Name: NF5454-Insertion-8
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5454-Insertion-8 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 438
Target Start/End: Original strand, 38982252 - 38982679
Alignment:
| Q |
8 |
cacactacctctagcattatccatagtaaaatcttggtccaagaaaaggggaggaggtgattacgagttaaagtcatg-tatgtacatgtgatatagagc |
106 |
Q |
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| T |
38982252 |
cacactacctctagcattatccatagtaaaatcttggtccaagaaaaggggaggaggtgattacgagttaaagtcatggtatgtacatgtgatatagagc |
38982351 |
T |
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| Q |
107 |
atctttattacaaattataaaacaaatgattttgacattaaatagagataaattctaagacatcgatgcagacatactcgggagggagggtatggttctc |
206 |
Q |
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| T |
38982352 |
atctttattacaaattataaaacaaatgattttgacattaaatagagataaattctaagacatcgatgcagagaaactcggga----gggtatggttctc |
38982447 |
T |
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| Q |
207 |
tctcctctccctaaccgtttttctccggtgaatttatctaccttcggtgcagctccggtggccgttttttcaccgttttattcgattatcttcgtcgttt |
306 |
Q |
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| T |
38982448 |
tctcctctccctaaccgtttttctccggtgaatttatctaccttcggtgcagctccggtggccgttttttcaccgttttattcgattatcttcgtcgttt |
38982547 |
T |
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| Q |
307 |
cacatgcgtttcttgcctccatcatctgcatcgcttctctccgcgggctttttgcgtctttgtgtttggcggtggtggttttagctctctggtgtggtgg |
406 |
Q |
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| T |
38982548 |
cacatgcgtttcttgcctccatcatctgcatcgcttctctccgcgggctttttgcctcttagtgtttggcggtggtggttttagctctctggtgtggtgg |
38982647 |
T |
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| Q |
407 |
tgcttggttctcgaagtggttacggttgtctc |
438 |
Q |
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| T |
38982648 |
cgcttggttctcgaagtggttacggttgtctc |
38982679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 150
Target Start/End: Complemental strand, 38985445 - 38985331
Alignment:
| Q |
37 |
aatcttggtccaagaaaaggggaggaggtgattacgagttaaagtcatgtatgtacatgtgatatagagcatctttattacaaatt-ataaaacaaatga |
135 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||| |
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| T |
38985445 |
aatcttgatccaagaaaaggggaggaggtgaatacgagttaaagtcatgtatgtacatgtgatatagagcatgtttactacaaattaataaaacaaatga |
38985346 |
T |
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| Q |
136 |
ttttgacattaaata |
150 |
Q |
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|||| |||||||||| |
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| T |
38985345 |
ttttcacattaaata |
38985331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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