View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5454-Insertion-9 (Length: 395)
Name: NF5454-Insertion-9
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5454-Insertion-9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 102 - 395
Target Start/End: Complemental strand, 51095107 - 51094814
Alignment:
| Q |
102 |
taattttgagattggtcatggggtttttgtctttaaagttcgagattgataataggtttatggtcaattttaggatttgggaacaaatgttagaatttat |
201 |
Q |
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| T |
51095107 |
taattttgagattggtcatagggtttttgtctttaaagttcgagattgataataggtttatggtcaattttaggatttgggaacaaatgttagaatttat |
51095008 |
T |
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| Q |
202 |
gactaactttagagaatacaactgattttagtggttgatggcaattttaggacttgtggccaaattttacggttaacgtttgattttagggtttgagccg |
301 |
Q |
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| T |
51095007 |
gactaactttagagaatacaactgattttagtggttgatggcaattttaggacttgtggccaaattttacggttaatgttcgattttagggtttgagccg |
51094908 |
T |
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| Q |
302 |
attttaagggttgagatcgatgttagtgtttagggctaattctagagaaatgatttttctatatatctttttgtgaaggaaatttctttattaa |
395 |
Q |
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| T |
51094907 |
attttaagggttgagatcgatgctagtgtttagggctaattctagagaaatgatttttttatatatctttttgtcaaggaaatttttttattaa |
51094814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 51095254 - 51095157
Alignment:
| Q |
7 |
actttggagtttcaatgataatagtgatcactgagtttcttacctgtgatatcat--tttgatttattctctcaattttataccccacttaaatgcat |
102 |
Q |
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| T |
51095254 |
actttggagtttcaatgataatagtgatcattgagtttcttatgtgttgtaatattatttgatttatccattcaattttatgccccacttaaatgcat |
51095157 |
T |
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