View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5454_high_11 (Length: 250)
Name: NF5454_high_11
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5454_high_11 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 13932888 - 13932656
Alignment:
| Q |
1 |
aatttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaccaacatcaacatttcaaacaataatctcaaaggattaattcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||| ||||||||||||||||||||||| | ||||||| |
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|
| T |
13932888 |
aatttcagataatgttccagagtggttttgggctaaactatcatcacaagaatgcaacagcatcaatatttcaaacaataatctcaaaggttcaattcca |
13932789 |
T |
|
| Q |
101 |
aatcttcaagtcaaaaatcattgttctcttttatctctttcatcaaatgaatttgaagggcctattccaccatttctacaaggttctgtatttattgatt |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||| |
|
|
| T |
13932788 |
aatcttcaagtcaaaaatcactgttctcttttatctctttcatcaaatgaatttgaagggcctattccagcatttttacaaggttctgcacttattgatt |
13932689 |
T |
|
| Q |
201 |
tgtccaaaaacaaattctcagattctcgcccat |
233 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
13932688 |
tgtccaaaaacaaattttcagattctcgcccat |
13932656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 14025821 - 14025582
Alignment:
| Q |
1 |
aatttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaccaacatcaacatttcaaacaataatctcaaaggattaattcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14025821 |
aatttcagataatgttccagagtggttttgggctaaactatcatcacaatggtgcaacaacatcaacatttcaaacaataatctcaaaggattaattcca |
14025722 |
T |
|
| Q |
101 |
aatcttcaagtcaaaaatcattgttctcttttatctctttcatcaaatgaatttgaagggcctattccaccatttctacaaggttctgtatttattgatt |
200 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||| |
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|
| T |
14025721 |
aatcttcaagtcaaaaatcgttgttctgttttatctctttcatcaaatgaatttgaagggcctattccaccatttctaaaaggttctacagttactgatt |
14025622 |
T |
|
| Q |
201 |
tgtccaaaaacaaattctcagattctcgcccatgcctatg |
240 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| |||||| |
|
|
| T |
14025621 |
tgtccaaaaacaaattctctgattctcttccattcctatg |
14025582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 13892529 - 13892768
Alignment:
| Q |
1 |
aatttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaccaacatcaacatttcaaacaataatctcaaaggattaattcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13892529 |
aatttcagataatgttccagagtggttttgggctaaattatcattaaaagagtgcagaagcatcaacatttcaaacaataatctcaaaggattaattcca |
13892628 |
T |
|
| Q |
101 |
aatcttcaagtcaaaaatcattgttctcttttatctctttcatcaaatgaatttgaagggcctattccaccatttctacaaggttctgtatttattgatt |
200 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| | |
|
|
| T |
13892629 |
aatcttcaagtcaaaaattattgttctattttatctctttcatcaaatgaatttgaagggcctattccaccatttctaaaaggttctacacttattgact |
13892728 |
T |
|
| Q |
201 |
tgtccaaaaacaaattctcagattctcgcccatgcctatg |
240 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| |||||| |
|
|
| T |
13892729 |
tgtccaaaaacaaattctccgattctcttccattcctatg |
13892768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 14015692 - 14015451
Alignment:
| Q |
1 |
aatttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaccaacatcaacatttcaaacaataatctcaaaggattaattcca |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
14015692 |
aatttcagataatattccagagtggttttgggctaaactatcatcacaagagtgctaccgcatcaacatttcaaacaataatctcaaaggttcaattcca |
14015593 |
T |
|
| Q |
101 |
aatcttcaagtcaaaaatcattgttctcttt--tatctctttcatcaaatgaatttgaagggcctattccaccatttctacaaggttctgtatttattga |
198 |
Q |
| |
|
|||||||||||||||| | ||| || | ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| |
|
|
| T |
14015592 |
aatcttcaagtcaaaattaattttttttttttatatctctttcatcaaatgaatttgaagggcctattccagcatttctacaaggttctgaacttattga |
14015493 |
T |
|
| Q |
199 |
tttgtccaaaaacaaattctcagattctcgcccatgcctatg |
240 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| |||||| |
|
|
| T |
14015492 |
tttgtccaaaaacaaattctctgattctcgtccattcctatg |
14015451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 14047870 - 14047644
Alignment:
| Q |
1 |
aatttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaccaacatcaacatttcaaacaataatctcaaaggattaattcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14047870 |
aatttcagataatgttccagagtggttttgggctaaactatcatcaccagagtgcagcaacatgaacattttaaacaataatctcaaaggattaattcca |
14047771 |
T |
|
| Q |
101 |
aatcttcaagtcaaaaatcattgttctcttttatctctttcatcaaatgaatttgaagggcctattccaccatttctacaaggttctgtatttattgatt |
200 |
Q |
| |
|
|||||||||| ||||| ||| |||||| |||||||||||||||||||||||||||||||| | | |||||| ||||||| |||||||| ||| |||||| |
|
|
| T |
14047770 |
aatcttcaagccaaaagtcaatgttcttttttatctctttcatcaaatgaatttgaagggtccactccaccttttctactaggttctggattaattgatc |
14047671 |
T |
|
| Q |
201 |
tgtccaaaaacaaattctcagattctc |
227 |
Q |
| |
|
| |||||||| |||||||| ||||||| |
|
|
| T |
14047670 |
tttccaaaaataaattctccgattctc |
14047644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 13874825 - 13875043
Alignment:
| Q |
1 |
aatttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaccaacatcaacatttcaaacaataatctcaaaggattaattcca |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
13874825 |
aatttcagataatgttcccgagtggttttgggctaaactatcatcacaagagtgcaagacaatcaacatttcatacaacaatctcaaaggattaattccg |
13874924 |
T |
|
| Q |
101 |
aatcttcaagtcaaaaatcattgttctcttttatctctttcatcaaatgaatttgaagggcctattccaccatttctacaaggttctgtatttattgatt |
200 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||||||| |||||||| |||||||||| | |||||||||||||| ||||||||||| |||||||| |
|
|
| T |
13874925 |
aatcttcatgtaaaaaatcattgttcttttttatctcttgcatcaaatcaatttgaaggctccattccaccatttctcagaggttctgtatctattgatt |
13875024 |
T |
|
| Q |
201 |
tgtccaaaaacaaattctc |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
13875025 |
tgtccaaaaacaaattctc |
13875043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 13472522 - 13472761
Alignment:
| Q |
1 |
aatttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaccaacatcaacatttcaaacaataatctcaaaggattaattcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| | | ||||||||||| | || ||||||||||||||||||||| |
|
|
| T |
13472522 |
aatttcagataatgttccagagtggttttggtctaaactatcatcccaagactgctctagaatcaacatttcctataacaatctcaaaggattaattcca |
13472621 |
T |
|
| Q |
101 |
aatcttcaagtcaaaaatcattgttctcttttatctctttcatcaaatgaatttgaagggcctattccaccatttctacaaggttctgtatttattgatt |
200 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||| | ||||||||||||||| ||||||| |||||||||| |
|
|
| T |
13472622 |
aatcttcaagtaaaaaatcattgttcttttttatatctttcatcaaatgaatttgaagggtccattccaccatttctaagaggttcttcatttattgatc |
13472721 |
T |
|
| Q |
201 |
tgtccaaaaacaaattctcagattctcgcccatgcctatg |
240 |
Q |
| |
|
|||||||||| || ||||| ||||||||||| | |||||| |
|
|
| T |
13472722 |
tgtccaaaaataagttctctgattctcgccctttcctatg |
13472761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 14111016 - 14110791
Alignment:
| Q |
1 |
aatttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaccaacatcaacatttcaaacaataatctcaaaggattaattcca |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||| | ||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
14111016 |
aatttcagataatgttccggagtggttttgggctaaactatcatcacaaaagtgcaggagcatcaacgtttcaaacaataatctcaaaggaataattcca |
14110917 |
T |
|
| Q |
101 |
aatcttcaagtcaaaaatcattgttctcttttatctctttcatcaaatgaatttgaagggcctattccaccatttctacaaggttctgtatttattgatt |
200 |
Q |
| |
|
||||||||||| |||||| |||| ||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
14110916 |
aatcttcaagtaaaaaattattgctctagtttatctctttcattaaatgaatttgaagggcccattccaccatttctacaaggttcccatgttattgacc |
14110817 |
T |
|
| Q |
201 |
tgtccaaaaacaaattctcagattct |
226 |
Q |
| |
|
||||||||||||| ||||| |||||| |
|
|
| T |
14110816 |
tgtccaaaaacaagttctctgattct |
14110791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 13862355 - 13862582
Alignment:
| Q |
1 |
aatttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaccaacatcaacatttcaaacaataatctcaaaggattaattcca |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||| ||||||| ||| ||||| | || |||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
13862355 |
aatttcagataatgttcctgagtggttttgggataatctatcattgcaaatgtgcaatacaataaacatttcaaacaataatcttaaaggatcaattcca |
13862454 |
T |
|
| Q |
101 |
aatcttcaagtcaaaaatcattgttctcttttatctctttcatcaaatgaatttgaagggcctattccaccatttctacaaggttctgtatttattgatt |
200 |
Q |
| |
|
||| | |||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| | |||||||| |
|
|
| T |
13862455 |
aatttaaaagtaaaaaatcactgttctcttttatctctttcatcaaatgattttgaagggcccattccaccatttctacgaggttctggacttattgatc |
13862554 |
T |
|
| Q |
201 |
tgtccaaaaacaaattctcagattctcg |
228 |
Q |
| |
|
| || ||||| ||||||||||||||||| |
|
|
| T |
13862555 |
tatcgaaaaataaattctcagattctcg |
13862582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 69 - 227
Target Start/End: Complemental strand, 13912295 - 13912137
Alignment:
| Q |
69 |
tttcaaacaataatctcaaaggattaattccaaatcttcaagtcaaaaatcattgttctcttttatctctttcatcaaatgaatttgaagggcctattcc |
168 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
13912295 |
tttcaaacaataatctcaaaggcttaattccaaatcttcaagtaaaaaatctttgttctgttttatcactttcatcaaatgaatttgaagggcccattcc |
13912196 |
T |
|
| Q |
169 |
accatttctacaaggttctgtatttattgatttgtccaaaaacaaattctcagattctc |
227 |
Q |
| |
|
||||||||| |||||||| | |||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
13912195 |
accatttctcaaaggttctacagttattgatttgtccaaaaacaagttctctgattctc |
13912137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 14085205 - 14084991
Alignment:
| Q |
3 |
tttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaccaacatcaacatttcaaacaataatctcaaaggattaattccaaa |
102 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||| | |||||| |||| |||| ||| ||||||||| |||||| || |
|
|
| T |
14085205 |
tttcagataatattccagagtggttttgggcaaaactatcatcacaagagtgcaggacaatcaacctttcttacaacaatttcaaaggatcaattccgaa |
14085106 |
T |
|
| Q |
103 |
tcttcaagtcaaaaatcattgttctcttttatctctttcatcaaatgaatttgaagggcctattccaccatttctacaaggttctgtatttattgatttg |
202 |
Q |
| |
|
||| || | | |||| |||||||| |||||| ||| |||||||||||||||||||| || |||||||||||||| |||||| || ||||||| || |
|
|
| T |
14085105 |
tctccacataagaaattattgttcttttttatttctgtcatcaaatgaatttgaaggtcccattccaccatttcttagaggttccataaatattgatctg |
14085006 |
T |
|
| Q |
203 |
tccaaaaacaaattc |
217 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
14085005 |
tccaaaaataaattc |
14084991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 13928879 - 13928814
Alignment:
| Q |
1 |
aatttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaccaacatcaa |
66 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
13928879 |
aatttcagataatgttcccgagtggttttgggctaaactatcatcacaagagtgcagcagcatcaa |
13928814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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