View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5454_high_14 (Length: 243)
Name: NF5454_high_14
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5454_high_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 63 - 243
Target Start/End: Complemental strand, 45642644 - 45642457
Alignment:
| Q |
63 |
tcaacgctaacaccgtcaattctgacacatcaacgccaaatccatgacccatcaacgccaattccgaaa-cctattccccatcgttattcatttcagact |
161 |
Q |
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| T |
45642644 |
tcaacgctaacaccgtcaattctgacacatcaacgccaaatccatgacccatcaacgccaattccaaaaccctattccccatcgttattcatttcagact |
45642545 |
T |
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| Q |
162 |
a------aacaacaacaacaaagaacttgtagttattcaaactcagatctaacgattccaaacccgtaaacgaagtacacgtgccgaa |
243 |
Q |
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| T |
45642544 |
aaacaacaacaacaacaacaaagaacttgtagttattcaaactcagatctaacgattccaaacacgtaaacgaagtacacgtgccgaa |
45642457 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 43437303 - 43437339
Alignment:
| Q |
186 |
agttattcaaactcagatctaacgattccaaacccgt |
222 |
Q |
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| T |
43437303 |
agttattcgaactcagatctaacaattccaaacccgt |
43437339 |
T |
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