View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5454_high_7 (Length: 276)

Name: NF5454_high_7
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5454_high_7
NF5454_high_7
[»] chr1 (7 HSPs)
chr1 (21-276)||(15577134-15577390)
chr1 (27-101)||(4379891-4379965)
chr1 (19-108)||(26016316-26016405)
chr1 (26-84)||(52442825-52442883)
chr1 (18-80)||(9509225-9509287)
chr1 (18-76)||(9599707-9599765)
chr1 (27-108)||(19936401-19936482)
[»] chr2 (9 HSPs)
chr2 (26-101)||(23714579-23714654)
chr2 (26-101)||(24102251-24102326)
chr2 (18-83)||(7825262-7825327)
chr2 (18-74)||(42092432-42092488)
chr2 (20-75)||(4598879-4598934)
chr2 (27-84)||(9647927-9647984)
chr2 (26-83)||(45077652-45077709)
chr2 (26-70)||(3865989-3866033)
chr2 (26-70)||(8180697-8180741)
[»] chr4 (9 HSPs)
chr4 (26-84)||(33709822-33709880)
chr4 (27-108)||(44860733-44860814)
chr4 (20-84)||(43070079-43070143)
chr4 (20-84)||(31403335-31403399)
chr4 (37-84)||(10775754-10775801)
chr4 (26-101)||(25257900-25257974)
chr4 (19-83)||(11389624-11389688)
chr4 (28-80)||(44359991-44360042)
chr4 (20-76)||(45205163-45205219)
[»] chr7 (13 HSPs)
chr7 (18-108)||(30200272-30200362)
chr7 (20-101)||(36514520-36514601)
chr7 (20-108)||(40139231-40139319)
chr7 (27-84)||(24550009-24550066)
chr7 (34-108)||(23720729-23720803)
chr7 (19-76)||(42187382-42187439)
chr7 (20-65)||(47848596-47848641)
chr7 (28-108)||(1740677-1740756)
chr7 (26-70)||(14593678-14593722)
chr7 (26-70)||(16013201-16013245)
chr7 (26-70)||(33072871-33072915)
chr7 (27-83)||(36102087-36102143)
chr7 (72-108)||(41948397-41948433)
[»] chr6 (6 HSPs)
chr6 (27-82)||(33998326-33998381)
chr6 (18-56)||(5631749-5631787)
chr6 (34-83)||(2079237-2079286)
chr6 (34-78)||(6293698-6293742)
chr6 (31-83)||(12134227-12134279)
chr6 (26-70)||(32755836-32755880)
[»] chr5 (4 HSPs)
chr5 (20-65)||(32516480-32516525)
chr5 (27-82)||(4026656-4026711)
chr5 (20-108)||(31636233-31636317)
chr5 (26-108)||(27998302-27998384)
[»] chr3 (6 HSPs)
chr3 (26-84)||(49841514-49841572)
chr3 (20-65)||(19736918-19736963)
chr3 (18-83)||(45236760-45236825)
chr3 (25-70)||(46568033-46568078)
chr3 (36-101)||(50632162-50632227)
chr3 (26-98)||(27917461-27917533)
[»] chr8 (5 HSPs)
chr8 (32-105)||(42493631-42493704)
chr8 (20-108)||(13171964-13172052)
chr8 (26-106)||(16351271-16351351)
chr8 (20-56)||(36069574-36069610)
chr8 (26-70)||(36545064-36545108)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 15577390 - 15577134
Alignment:
Q  21 atccggtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatttccattttggttctttacagcccaatttaaaagctga 120  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15577390 atcccgtctagtcttaccgcacatccaacacgacatgatcatctctgctaagcttaatttatttccattttggttctttacagcccaatttaaaagctga 15577291  T
Q  121 ttgcatttattaacacctaaaagcttaaaaataattgtcttacaactatgcagagttcaaaattctatgagatcatcacaacttcctttcctaaaaaaca 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15577290 ttgcatttattaacacctaaaagcttaaaaataattgtcttacaactatgcagagttcaaaattctatgagatcatcacaacttcctttcctaaaaaaca 15577191  T
Q  221 gaactccaactgacagaaacatgaaacagatcagatgacagac-acaaacaatattt 276  Q
    ||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||    
T  15577190 gaactccaactgacagaaacatgaaacagattagatgacagacaaaaaacaatattt 15577134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 4379965 - 4379891
Alignment:
Q  27 tctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatttccattttggttctttac 101  Q
    ||||||||||||||||||||||||| ||||  ||||||| ||||||||| |||||||| | | ||||||||||||    
T  4379965 tctagtcttaccacacatccaacacaacatcctcatctcagctaagctttatttattttcgtgttggttctttac 4379891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 26016405 - 26016316
Alignment:
Q  19 atatccggtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatttccattttggttctttacagcccaa 108  Q
    |||||| |||||||||||||||||||||||| | ||||  |||||||||||| ||||| ||||| | | | |||||||||||| ||||||    
T  26016405 atatcctgtctagtcttaccacacatccaacgcaacatcctcatctctgctacgcttactttatgttcttgttggttctttaccgcccaa 26016316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 52442825 - 52442883
Alignment:
Q  26 gtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttattt 84  Q
    |||||||||||||||||||||||||| ||||  |||| ||||||| |||||||||||||    
T  52442825 gtctagtcttaccacacatccaacacaacatcctcatgtctgctacgcttaatttattt 52442883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 9509287 - 9509225
Alignment:
Q  18 catatccggtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaattt 80  Q
    ||||||| ||||||||||| ||| |||||||||| ||||  |||||||||||| |||||||||    
T  9509287 catatcctgtctagtcttatcactcatccaacacaacatcctcatctctgctacgcttaattt 9509225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 9599707 - 9599765
Alignment:
Q  18 catatccggtctagtcttaccacacatccaacacgacatgatcatctctgctaagctta 76  Q
    ||||||| ||||||||||||||| |||||||||| ||||  |||||||||||| |||||    
T  9599707 catatcccgtctagtcttaccactcatccaacacaacatcctcatctctgctacgctta 9599765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 19936482 - 19936401
Alignment:
Q  27 tctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatttccattttggttctttacagcccaa 108  Q
    |||||||||||||| |||||||||| ||||  ||||||| |||| ||||| || |||  ||| ||||||||| || ||||||    
T  19936482 tctagtcttaccactcatccaacacaacattctcatctccgctatgcttatttgattctcatgttggttcttaaccgcccaa 19936401  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 23714579 - 23714654
Alignment:
Q  26 gtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatttccattttggttctttac 101  Q
    |||||||||||||||||||||||||| ||||  | |||||||||| ||||||||||||| | | ||||||||||||    
T  23714579 gtctagtcttaccacacatccaacacaacattctaatctctgctatgcttaatttattttcgtgttggttctttac 23714654  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 24102251 - 24102326
Alignment:
Q  26 gtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatttccattttggttctttac 101  Q
    |||||||||||||||||||||||||| ||||  | |||||||||| ||||||||||||| | | ||||||||||||    
T  24102251 gtctagtcttaccacacatccaacacaacattctaatctctgctatgcttaatttattttcgtgttggttctttac 24102326  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 7825327 - 7825262
Alignment:
Q  18 catatccggtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatt 83  Q
    ||||||| |||||||||||||||||||||||| | ||||  | |||||||||| ||||| ||||||    
T  7825327 catatccagtctagtcttaccacacatccaacgcaacatcctaatctctgctacgcttactttatt 7825262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 42092488 - 42092432
Alignment:
Q  18 catatccggtctagtcttaccacacatccaacacgacatgatcatctctgctaagct 74  Q
    ||||||| |||||||||||| ||||||||||  | |||| |||||||||||||||||    
T  42092488 catatcccgtctagtcttactacacatccaatgcaacatcatcatctctgctaagct 42092432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 4598879 - 4598934
Alignment:
Q  20 tatccggtctagtcttaccacacatccaacacgacatgatcatctctgctaagctt 75  Q
    ||||| |||||||||||||||||||||||| | |||| ||||| ||||||| ||||    
T  4598879 tatcccgtctagtcttaccacacatccaacgcaacatcatcatttctgctacgctt 4598934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 9647927 - 9647984
Alignment:
Q  27 tctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttattt 84  Q
    ||||||||||||||||||||||| | ||||  ||||||||||||   |||||||||||    
T  9647927 tctagtcttaccacacatccaacgcaacatcctcatctctgctacatttaatttattt 9647984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 45077709 - 45077652
Alignment:
Q  26 gtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatt 83  Q
    |||||||||||||||||||||||| | ||||  ||||||| |||| ||||| ||||||    
T  45077709 gtctagtcttaccacacatccaacgcaacatcctcatctcagctatgcttattttatt 45077652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 3866033 - 3865989
Alignment:
Q  26 gtctagtcttaccacacatccaacacgacatgatcatctctgcta 70  Q
    ||||||||||||||| |||||||| | |||| |||||||||||||    
T  3866033 gtctagtcttaccactcatccaacgcaacatcatcatctctgcta 3865989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 8180741 - 8180697
Alignment:
Q  26 gtctagtcttaccacacatccaacacgacatgatcatctctgcta 70  Q
    ||||||||||||||| |||||||||| ||||  ||||||||||||    
T  8180741 gtctagtcttaccactcatccaacacaacatcctcatctctgcta 8180697  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 33709880 - 33709822
Alignment:
Q  26 gtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttattt 84  Q
    |||||||||||||||||||||||| | |||| ||||||||||||| |||||||||||||    
T  33709880 gtctagtcttaccacacatccaacgcaacatcatcatctctgctaggcttaatttattt 33709822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 44860814 - 44860733
Alignment:
Q  27 tctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatttccattttggttctttacagcccaa 108  Q
    ||||||||||||||||||||||||| ||||  |||| |||||||  |||||||||||| |   ||||||||| |||||||||    
T  44860814 tctagtcttaccacacatccaacacaacatcctcatttctgctacacttaatttattttctccttggttcttcacagcccaa 44860733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 43070079 - 43070143
Alignment:
Q  20 tatccggtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttattt 84  Q
    ||||| ||||| |||||||||||||||||| | ||||||||||||||||||  ||||| ||||||    
T  43070079 tatcctgtctaatcttaccacacatccaacccaacatgatcatctctgctacacttaaattattt 43070143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 31403335 - 31403399
Alignment:
Q  20 tatccggtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttattt 84  Q
    ||||| ||||| ||| ||||||||| |||| | |||| ||||||||||||| |||||||||||||    
T  31403335 tatcccgtctaatctcaccacacattcaactcaacatcatcatctctgctacgcttaatttattt 31403399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 10775754 - 10775801
Alignment:
Q  37 ccacacatccaacacgacatgatcatctctgctaagcttaatttattt 84  Q
    |||| |||||||||| |||| ||||||||||||| |||||||||||||    
T  10775754 ccacgcatccaacacaacatcatcatctctgctacgcttaatttattt 10775801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 25257900 - 25257974
Alignment:
Q  26 gtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatttccattttggttctttac 101  Q
    |||||||||||| ||||||||||||| ||| | |||||| ||||| ||| ||||| ||| ||| ||||||||||||    
T  25257900 gtctagtcttactacacatccaacacaacaagctcatctttgctacgctcaatttcttt-catgttggttctttac 25257974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 11389688 - 11389624
Alignment:
Q  19 atatccggtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatt 83  Q
    |||||| ||||||| |||||||||||||||  | ||||  |||||||||||| ||||| ||||||    
T  11389688 atatcccgtctagttttaccacacatccaatccaacatcctcatctctgctacgcttactttatt 11389624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 44360042 - 44359991
Alignment:
Q  28 ctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaattt 80  Q
    |||||| ||||||||||||||||| |||| |||||||| |||| |||||||||    
T  44360042 ctagtcctaccacacatccaacacaacat-atcatctcagctacgcttaattt 44359991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 45205163 - 45205219
Alignment:
Q  20 tatccggtctagtcttaccacacatccaacacgacatgatcatctctgctaagctta 76  Q
    ||||| ||||||||||||||| |||||||||| ||||  ||||||| |||| |||||    
T  45205163 tatcccgtctagtcttaccactcatccaacacaacatcctcatctccgctacgctta 45205219  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 30200272 - 30200362
Alignment:
Q  18 catatccggtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatttccattttggttctttacagcccaa 108  Q
    |||||||  |||| |||||||||||||||||||| ||||  ||||||||||||  |||| ||||||||||  ||||||||| |||| ||||    
T  30200272 catatcccatctaatcttaccacacatccaacacaacatcctcatctctgctacacttagtttatttccaagttggttcttgacagaccaa 30200362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 36514520 - 36514601
Alignment:
Q  20 tatccggtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatttccattttggttctttac 101  Q
    ||||| || ||||||||||||||||||||| | ||||  ||||||||||||  |||||||||||| | | ||||||||||||    
T  36514520 tatcccgtttagtcttaccacacatccaacgcaacatcctcatctctgctacacttaatttattttcgtgttggttctttac 36514601  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 40139231 - 40139319
Alignment:
Q  20 tatccggtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatttccattttggttctttacagcccaa 108  Q
    ||||| ||||||||||||||||||||| |||| ||||  || ||||||| | ||| ||||||||||| | ||||||||| ||| |||||    
T  40139231 tatcccgtctagtcttaccacacatcccacacaacatcctcgtctctgcaacgctgaatttatttccgtgttggttcttaacaacccaa 40139319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 24550009 - 24550066
Alignment:
Q  27 tctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttattt 84  Q
    ||||||||||| ||||||||||||| ||||  |||||||||||| || ||||||||||    
T  24550009 tctagtcttacaacacatccaacacaacatcctcatctctgctacgcataatttattt 24550066  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 23720803 - 23720729
Alignment:
Q  34 ttaccacacatccaacacgacatgatcatctctgctaagcttaatttatttccattttggttctttacagcccaa 108  Q
    |||||||||||||||||| ||||  |||||||| |||  ||| |||||| ||| | ||||||||||| |||||||    
T  23720803 ttaccacacatccaacacaacattctcatctctactacacttcatttatatccgtgttggttctttaaagcccaa 23720729  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 42187439 - 42187382
Alignment:
Q  19 atatccggtctagtcttaccacacatccaacacgacatgatcatctctgctaagctta 76  Q
    |||||| |||||||||||| ||||||||||||| ||||  ||||||| |||| |||||    
T  42187439 atatcccgtctagtcttactacacatccaacacaacatcctcatctccgctacgctta 42187382  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 47848641 - 47848596
Alignment:
Q  20 tatccggtctagtcttaccacacatccaacacgacatgatcatctc 65  Q
    ||||| |||||||||||||||||||||||||| ||||  |||||||    
T  47848641 tatcccgtctagtcttaccacacatccaacacaacatcctcatctc 47848596  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 1740756 - 1740677
Alignment:
Q  28 ctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatttccattttggttctttacagcccaa 108  Q
    |||||||||| ||||||||||| | ||||  ||||||||||||  ||| | |||||||||| | ||||||||||| |||||    
T  1740756 ctagtcttactacacatccaacgcaacatcctcatctctgctacactt-acttatttccatgtgggttctttacaacccaa 1740677  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 14593722 - 14593678
Alignment:
Q  26 gtctagtcttaccacacatccaacacgacatgatcatctctgcta 70  Q
    |||||||||||||||||||||||| | ||||  ||||||||||||    
T  14593722 gtctagtcttaccacacatccaacgcaacatcctcatctctgcta 14593678  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 16013245 - 16013201
Alignment:
Q  26 gtctagtcttaccacacatccaacacgacatgatcatctctgcta 70  Q
    |||||||||||||||||||||||| | ||||  ||||||||||||    
T  16013245 gtctagtcttaccacacatccaacgcaacatcctcatctctgcta 16013201  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 33072915 - 33072871
Alignment:
Q  26 gtctagtcttaccacacatccaacacgacatgatcatctctgcta 70  Q
    ||||||||||||||| |||||||| | |||| |||||||||||||    
T  33072915 gtctagtcttaccactcatccaacgcaacatcatcatctctgcta 33072871  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 36102087 - 36102143
Alignment:
Q  27 tctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatt 83  Q
    ||||||||||||||||||| ||| | ||||  |||||||||||  ||||||||||||    
T  36102087 tctagtcttaccacacatcgaactcaacattttcatctctgctgcgcttaatttatt 36102143  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 41948433 - 41948397
Alignment:
Q  72 gcttaatttatttccattttggttctttacagcccaa 108  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  41948433 gcttaatttattttcatgttggttctttacagcccaa 41948397  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 33998326 - 33998381
Alignment:
Q  27 tctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttat 82  Q
    ||||||||||||||||||||||| | ||||  |||||||||||| |||||||||||    
T  33998326 tctagtcttaccacacatccaacgcaacatcttcatctctgctacgcttaatttat 33998381  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 5631787 - 5631749
Alignment:
Q  18 catatccggtctagtcttaccacacatccaacacgacat 56  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  5631787 catatccggtctagtcttaccactcatccaacacaacat 5631749  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 2079286 - 2079237
Alignment:
Q  34 ttaccacacatccaacacgacatgatcatctctgctaagcttaatttatt 83  Q
    |||||||||||||||||| |||| |||||||| |||| ||||| ||||||    
T  2079286 ttaccacacatccaacacaacatcatcatctccgctacgcttattttatt 2079237  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 6293698 - 6293742
Alignment:
Q  34 ttaccacacatccaacacgacatgatcatctctgctaagcttaat 78  Q
    |||||||||||||||||| ||||  |||||||||||| |||||||    
T  6293698 ttaccacacatccaacacaacatcctcatctctgctatgcttaat 6293742  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 12134227 - 12134279
Alignment:
Q  31 gtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatt 83  Q
    ||||| ||||||||||||||| ||||  |||||||||||| ||||| ||||||    
T  12134227 gtcttgccacacatccaacacaacattctcatctctgctatgcttagtttatt 12134279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 32755880 - 32755836
Alignment:
Q  26 gtctagtcttaccacacatccaacacgacatgatcatctctgcta 70  Q
    ||||||||||||||| |||||||||| ||||  ||||||||||||    
T  32755880 gtctagtcttaccactcatccaacacaacatcctcatctctgcta 32755836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 32516525 - 32516480
Alignment:
Q  20 tatccggtctagtcttaccacacatccaacacgacatgatcatctc 65  Q
    ||||| |||||||||||||||||||||||||| |||| ||||||||    
T  32516525 tatcctgtctagtcttaccacacatccaacacaacatcatcatctc 32516480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 4026656 - 4026711
Alignment:
Q  27 tctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttat 82  Q
    |||||||||||||||||| |||||   |||  ||||||||||||||||||||||||    
T  4026656 tctagtcttaccacacatacaacaaagcatattcatctctgctaagcttaatttat 4026711  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 31636233 - 31636317
Alignment:
Q  20 tatccggtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatttccattttggttctttacagcccaa 108  Q
    ||||| |||||||||||||||| ||||||    |||| ||||||||||||| || ||||||||||   | |||||||||||| ||||||    
T  31636233 tatccagtctagtcttaccacaaatccaa----acatcatcatctctgctacgcataatttatttttgtgttggttctttaccgcccaa 31636317  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 27998384 - 27998302
Alignment:
Q  26 gtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatttccattttggttctttacagcccaa 108  Q
    |||||||||||||||||||||||| | ||||  ||||||||| || |||||||| | || | | |||||| |||||| |||||    
T  27998384 gtctagtcttaccacacatccaacgcaacatcctcatctctgatatgcttaattcactttcgtgttggttttttacatcccaa 27998302  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 49841572 - 49841514
Alignment:
Q  26 gtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttattt 84  Q
    |||||||||||| ||||||||||||| ||||  |||||| |||||  ||||||||||||    
T  49841572 gtctagtcttactacacatccaacacaacatcctcatctatgctacacttaatttattt 49841514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 19736963 - 19736918
Alignment:
Q  20 tatccggtctagtcttaccacacatccaacacgacatgatcatctc 65  Q
    ||||| ||||||||||||||| |||||||||| |||| ||||||||    
T  19736963 tatcccgtctagtcttaccactcatccaacacaacatcatcatctc 19736918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 45236825 - 45236760
Alignment:
Q  18 catatccggtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatt 83  Q
    ||||||| |||||||||||||||||||||||| | ||||  | ||||| |||| ||||| ||||||    
T  45236825 catatccagtctagtcttaccacacatccaacgcaacatcctaatctcggctaggcttactttatt 45236760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 46568078 - 46568033
Alignment:
Q  25 ggtctagtcttaccacacatccaacacgacatgatcatctctgcta 70  Q
    |||||||||||| |||||||||||||| ||||  ||||||||||||    
T  46568078 ggtctagtcttaacacacatccaacacaacatcctcatctctgcta 46568033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 50632162 - 50632227
Alignment:
Q  36 accacacatccaacacgacatgatcatctctgctaagcttaatttatttccattttggttctttac 101  Q
    ||||| |||||||||| | ||  |||||||| ||| ||||||||||||| ||| ||||||||||||    
T  50632162 accacgcatccaacacaaaattctcatctctactacgcttaatttattttcatgttggttctttac 50632227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 27917533 - 27917461
Alignment:
Q  26 gtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatttccattttggttctt 98  Q
    |||||| |||||||| |||||||||| ||||  |||||||||||| ||||| || |||  | |||||||||||    
T  27917533 gtctaggcttaccactcatccaacacaacatcctcatctctgctacgcttacttgattctcgttttggttctt 27917461  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 42493631 - 42493704
Alignment:
Q  32 tcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatttccattttggttctttacagcc 105  Q
    |||||||||||| ||||| | ||||  |||||| |||||  |||||||||||| | | ||||||||||||||||    
T  42493631 tcttaccacacaaccaacgcaacatcctcatctttgctacacttaatttattttcttgttggttctttacagcc 42493704  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 13171964 - 13172052
Alignment:
Q  20 tatccggtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatttccattttggttctttacagcccaa 108  Q
    ||||| |||||||||||| ||||||||||  | ||||  ||||||||| |  |||||||||||||  || ||||||||| || ||||||    
T  13171964 tatcccgtctagtcttactacacatccaatgcaacattctcatctctgatgtgcttaatttatttttatgttggttcttaaccgcccaa 13172052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 16351351 - 16351271
Alignment:
Q  26 gtctagtcttaccacacatccaacacgacatgatcatctctgctaagcttaatttatttccattttggttctttacagccc 106  Q
    |||||||||||||||| ||||||| | ||||  |||||||  ||| |||||| |||| | ||| |||||||||||| ||||    
T  16351351 gtctagtcttaccacatatccaacgcaacatcttcatctcatctatgcttaacttatgttcatattggttctttaccgccc 16351271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 36069610 - 36069574
Alignment:
Q  20 tatccggtctagtcttaccacacatccaacacgacat 56  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  36069610 tatcccgtctagtcttaccacacatccaacacaacat 36069574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 36545108 - 36545064
Alignment:
Q  26 gtctagtcttaccacacatccaacacgacatgatcatctctgcta 70  Q
    ||||||||||||||| |||||||||| ||||  ||||||||||||    
T  36545108 gtctagtcttaccactcatccaacacaacatcctcatctctgcta 36545064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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