View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5454_high_9 (Length: 254)
Name: NF5454_high_9
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5454_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 34816350 - 34816104
Alignment:
| Q |
1 |
cccctgtatctgattggtattatggctacagcttgatttgtcttttccctatatttacaaacataggattgtttttccttatttgattataatgtcatca |
100 |
Q |
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| T |
34816350 |
cccctgtatctgattggtattatggctacagcttgatttgtcttttccctatatttacaaacataggattgtttttccttatttgattataatgtcatca |
34816251 |
T |
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| Q |
101 |
gtaagttccactctctatgatatagaaaagtcattaggcttgtctgcatggcttgaaactttggatagtttaagttagggcctttaagttattaccaagt |
200 |
Q |
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| T |
34816250 |
gtaagttccactctctatgatatagaaaagtcattaggcttgtctgcatggcttgaaactttggatagtttaagttagggcctttaagttattaccaagt |
34816151 |
T |
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| Q |
201 |
tagtcacatttacattttctttttctgaatttgatttccctttgcta |
247 |
Q |
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| T |
34816150 |
tagtcacatttacattttctttttctgaatttgatttccctttgcta |
34816104 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 28177137 - 28177058
Alignment:
| Q |
14 |
ttggtattatggctacagcttgatttgtcttttccctatatttacaaacataggattgtttttccttatttgattataatg |
94 |
Q |
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| T |
28177137 |
ttggtcttatggctgcaacttgattttccttttcactatacttgcaaacttaggatcgtttttg-ttatttgattataatg |
28177058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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