View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5454_low_1 (Length: 515)
Name: NF5454_low_1
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5454_low_1 |
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| [»] scaffold0160 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 114 - 382
Target Start/End: Complemental strand, 9546232 - 9545964
Alignment:
| Q |
114 |
gtacgaggaagatacaaatgcgacacgtgtaacaaagtgtttcgttcatatcaagcactaggtggacacagagcgagtcacaagaaaaataaacaagttg |
213 |
Q |
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| T |
9546232 |
gtacgaggaagatacaaatgcgacacgtgtaacaaagtgtttcgttcatatcaagcactaggtggacacagagcgagtcacaagaaaaataaacaagttg |
9546133 |
T |
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| Q |
214 |
cagaaagtggtggtgattattcaatttcacaacaacatgaaaaaattaacattgnnnnnnntatcaatgttactgaaaagaaaattcatgaatgtccaat |
313 |
Q |
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| T |
9546132 |
cagaaagtggtggtgattattcaatttcacaacatcatgaaaaaattaacattgaaaaaaatatcaatgttagtgaaaagaaaattcatgaatgtccaat |
9546033 |
T |
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| Q |
314 |
ttgttttagagaattttcttcaggtcaagcactaggtggacataggagaacacataatattggattcgg |
382 |
Q |
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| T |
9546032 |
ttgttttagagaatttgcttcaggtcaagcactaggtggacataggagaacacataatattggattcgg |
9545964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 422 - 499
Target Start/End: Complemental strand, 9545930 - 9545853
Alignment:
| Q |
422 |
aacaacaatggttagaaggaacgtcgaggttgctcgagtttccgcgaatgttggagatagtttgttagatctaaattt |
499 |
Q |
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| T |
9545930 |
aacaacaatggttagaaggaacgtcaaggttgctcgagtttccgcgaatgttggagatagtttgttagatctaaattt |
9545853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0160 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 368
Target Start/End: Complemental strand, 19675 - 19594
Alignment:
| Q |
287 |
tgaaaagaaaattcatgaatgtccaatttgttttagagaattttcttcaggtcaagcactaggtggacataggagaacacat |
368 |
Q |
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| T |
19675 |
tgaaaagaaagttcatgaatgtccggtatgttttcgagtatttaattcgggtcaagcacttggtggacacaaaagaacacat |
19594 |
T |
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