View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5454_low_16 (Length: 242)
Name: NF5454_low_16
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5454_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 42518312 - 42518534
Alignment:
| Q |
13 |
aaaatagaccaagggtgtttgatggctttagaggcttgacttgctgcaactaaatcgttaaactcatcatcaacatctgaagttccccgaatcttaatca |
112 |
Q |
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| T |
42518312 |
aaaatagaccaagggtgtttgatggctttagaggcttgacttgctgcaagtaaatcgttaaactcatcatcaacatctgaagttccccgaatcttaatca |
42518411 |
T |
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| Q |
113 |
actcctttttagctttgtcatctagacctctttcaatcaatgaacttggcgaatcgggaagaaagattgcaccaataatgatcattatcgcgggaactcc |
212 |
Q |
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| T |
42518412 |
actcctttttagctttgtcatctagacctctttcaatcaatgaacttggcgaatcgggaagaaagattgcaccaataatgatcattatcgcgggaactcc |
42518511 |
T |
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| Q |
213 |
agcacatcccaaactgtatcgcc |
235 |
Q |
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| T |
42518512 |
agcacatcccaaactgtatcgcc |
42518534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 1239998 - 1240212
Alignment:
| Q |
21 |
ccaagggtgtttgatggctttagaggcttgacttgctgcaactaaatcgttaaactcatcatcaacatctgaagttccccgaatcttaatcaactccttt |
120 |
Q |
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| T |
1239998 |
ccaagggtatttgatggctttagaggcttgacttgctgcaagtaaatcgttaaactcatcatcaacatctgatgtcccccgaatcttaatcaactccttt |
1240097 |
T |
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| Q |
121 |
ttagctttgtcatctagacctctttcaatcaatgaacttggcgaatcgggaagaaagattgcaccaataatgatcattatcgcgggaactccagcacatc |
220 |
Q |
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| T |
1240098 |
ttagctttgtcatcttgacctctttcaatcaatgaacttggcgaatcgggaagaaagattgcaccgataattatcattatcgcgggaactacagcaaatc |
1240197 |
T |
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| Q |
221 |
ccaaactgtatcgcc |
235 |
Q |
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| T |
1240198 |
ccaaactgtaccgcc |
1240212 |
T |
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