View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5454_low_18 (Length: 238)

Name: NF5454_low_18
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5454_low_18
NF5454_low_18
[»] chr6 (11 HSPs)
chr6 (1-223)||(13933050-13933272)
chr6 (1-221)||(13892147-13892367)
chr6 (5-223)||(13861971-13862189)
chr6 (13-221)||(14085381-14085589)
chr6 (1-205)||(13874459-13874663)
chr6 (1-193)||(14025983-14026175)
chr6 (9-221)||(14048040-14048252)
chr6 (9-205)||(13472156-13472352)
chr6 (1-205)||(14111178-14111382)
chr6 (132-223)||(14015913-14016004)
chr6 (1-35)||(14015854-14015888)


Alignment Details
Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 13933050 - 13933272
Alignment:
Q  1 taattcctttaacattgacataccagaaaaatggacatcggagatcacaacattcaaagagttcgaacccatcaatagtatccatagtttagctggaaat 100  Q
    ||||||||||||||||||||||||||||||||| |  || ||||||||| |||||| |||||| |||| |||   |||| ||| |||||| | |||||||    
T  13933050 taattcctttaacattgacataccagaaaaatgaaattcagagatcacaccattcatagagtttgaactcatttgtagtgtccttagtttggttggaaat 13933149  T
Q  101 cgaatatgttcaaatatcttcccgttcagtctattttgagaaatatcaaatatttccaagagtgagaatattgagagatcaggtagtgtgccattgattt 200  Q
    ||||||| |||| ||||||||||||| || ||||||| ||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  13933150 cgaatatcttcagatatcttcccgtttaggctattttcagaaatatcgaatatttccaaaaatgagaatattgagagatcaggtagtgtgccattgattt 13933249  T
Q  201 tattactgcttagatctaattct 223  Q
    |||||||||||||||||||||||    
T  13933250 tattactgcttagatctaattct 13933272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 13892367 - 13892147
Alignment:
Q  1 taattcctttaacattgacataccagaaaaatggacatcggagatcacaacattcaaagagttcgaacccatcaatagtatccatagtttagctggaaat 100  Q
    |||||||| ||||||||||||||||||||||||||  || ||||||||| || | |||||||||||| ||||    ||| ||| |||| ||| |||||||    
T  13892367 taattcctctaacattgacataccagaaaaatggaagtcagagatcacaccacttaaagagttcgaatccatgctcagtgtccttagtgtagttggaaat 13892268  T
Q  101 cgaatatgttcaaatatcttcccgttcagtctattttgagaaatatcaaatatttccaagagtgagaatattgagagatcaggtagtgtgccattgattt 200  Q
    ||||||| |||||||||||| ||||| |||||||||| |||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||||    
T  13892267 cgaatatcttcaaatatctttccgtttagtctattttcagaaatatcaaatatttccaaagatgagaatatcgagagatcaggtagtgtgccattgattt 13892168  T
Q  201 tattactgcttagatctaatt 221  Q
     ||||| ||||||||||||||    
T  13892167 gattaccgcttagatctaatt 13892147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 13862189 - 13861971
Alignment:
Q  5 tcctttaacattgacataccagaaaaatggacatcggagatcacaacattcaaagagttcgaacccatcaatagtatccatagtttagctggaaatcgaa 104  Q
    ||||||||||||||||||||||||||||| |  || ||||||||| |||||| ||||||||||||||||  |||| ||| |||||| | |||||||||||    
T  13862189 tcctttaacattgacataccagaaaaatgaaattcagagatcacaccattcatagagttcgaacccatccgtagtgtccttagtttggttggaaatcgaa 13862090  T
Q  105 tatgttcaaatatcttcccgttcagtctattttgagaaatatcaaatatttccaagagtgagaatattgagagatcaggtagtgtgccattgattttatt 204  Q
    ||| |||| ||||||||||| | || ||||||| ||||||||||||||||||||| || ||||||||||||||||| ||| |||| |||||||||| |||    
T  13862089 tatcttcatatatcttcccgcttagcctatttttagaaatatcaaatatttccaaaagggagaatattgagagatcgggttgtgtcccattgatttgatt 13861990  T
Q  205 actgcttagatctaattct 223  Q
    |  ||||||||||||||||    
T  13861989 aaagcttagatctaattct 13861971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 14085381 - 14085589
Alignment:
Q  13 cattgacataccagaaaaatggacatcggagatcacaacattcaaagagttcgaacccatcaatagtatccatagtttagctggaaatcgaatatgttca 112  Q
    |||||||||||||||||||||||  || ||||||||| |||| |||||||| |||  ||||  |||| ||| |||||| | |||||||||||||| || |    
T  14085381 cattgacataccagaaaaatggaagtcagagatcacaccatttaaagagtttgaatgcatccgtagtgtccttagtttggttggaaatcgaatatcttta 14085480  T
Q  113 aatatcttcccgttcagtctattttgagaaatatcaaatatttccaagagtgagaatattgagagatcaggtagtgtgccattgattttattactgctta 212  Q
    | ||||||||| || |||||||||| ||||||||||||||||||||| |  ||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  14085481 agtatcttcccatttagtctattttcagaaatatcaaatatttccaaaaaggagaatattgacagatcaggtagtgtgccattgatttgattactgctta 14085580  T
Q  213 gatctaatt 221  Q
    |||||||||    
T  14085581 gatctaatt 14085589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 13874663 - 13874459
Alignment:
Q  1 taattcctttaacattgacataccagaaaaatggacatcggagatcacaacattcaaagagttcgaacccatcaatagtatccatagtttagctggaaat 100  Q
    |||||||||||||||||||||||||||||||||||  || ||||||||| |||  |||||||| ||| |||||  |||| ||| |||||||| ||||||     
T  13874663 taattcctttaacattgacataccagaaaaatggaattcagagatcacaccatgtaaagagtttgaatccatccgtagtgtccttagtttagttggaaac 13874564  T
Q  101 cgaatatgttcaaatatcttcccgttcagtctattttgagaaatatcaaatatttccaagagtgagaatattgagagatcaggtagtgtgccattgattt 200  Q
    ||||||| ||||  ||||| |||||| ||  |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  13874563 cgaatatcttcatgtatctccccgtttagcttatttttagaaatatcaaatatttccaagaatgagaatattgagagatcaggtagtgttccattgattt 13874464  T
Q  201 tatta 205  Q
     ||||    
T  13874463 gatta 13874459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 14025983 - 14026175
Alignment:
Q  1 taattcctttaacattgacataccagaaaaatggacatcggagatcacaacattcaaagagttcgaacccatcaatagtatccatagtttagctggaaat 100  Q
    ||||||||||||||||||||||||||||||||| |  || ||||||||| || | |||  |||||||  |||   ||||||||||||| ||| |||||||    
T  14025983 taattcctttaacattgacataccagaaaaatgaaattctgagatcacaccacttaaattgttcgaattcattcgtagtatccatagtgtagttggaaat 14026082  T
Q  101 cgaatatgttcaaatatcttcccgttcagtctattttgagaaatatcaaatatttccaagagtgagaatattgagagatcaggtagtgtgcca 193  Q
    ||||||| |||||||||||||||||| |||||||||| |||||||||||| |||||||| | | |||||||||||||||||||||||||||||    
T  14026083 cgaatatcttcaaatatcttcccgtttagtctattttcagaaatatcaaacatttccaaaaataagaatattgagagatcaggtagtgtgcca 14026175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 14048040 - 14048252
Alignment:
Q  9 ttaacattgacataccagaaaaatggacatcggagatcacaacattcaaagagttcgaacccatcaatagtatccatagtttagctggaaatcgaatatg 108  Q
    ||||||||||||||||| |||||||||  || ||||||||| || | |||||||||||||  |     ||||||| |||| ||| ||||||||||||||     
T  14048040 ttaacattgacataccataaaaatggaagtcagagatcacaccacttaaagagttcgaacttaattccagtatccttagtgtagttggaaatcgaatatc 14048139  T
Q  109 ttcaaatatcttcccgttcagtctattttgagaaatatcaaatatttccaagagtgagaatattgagagatcaggtagtgtgccattgattttattactg 208  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||||||| | ||||||||||||||||| ||||||||| ||||| |||| ||| |||    
T  14048140 ttcaaatatcttcccgtttagcctattttcagaaatatcaaatatttccaaaaatgagaatattgagagattaggtagtgtcccattaatttgattgctg 14048239  T
Q  209 cttagatctaatt 221  Q
    |||||||||||||    
T  14048240 cttagatctaatt 14048252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 205
Target Start/End: Complemental strand, 13472352 - 13472156
Alignment:
Q  9 ttaacattgacataccagaaaaatggacatcggagatcacaacattcaaagagttcgaacccatcaatagtatccatagtttagctggaaatcgaatatg 108  Q
    |||||||||||||||||||||||||||  |||||||||||  ||||||||||||| || ||||||  ||||| || |||  ||| ||||||||||||||     
T  13472352 ttaacattgacataccagaaaaatggaagtcggagatcacgccattcaaagagtttgagcccatctgtagtagccttagagtagttggaaatcgaatatc 13472253  T
Q  109 ttcaaatatcttcccgttcagtctattttgagaaatatcaaatatttccaagagtgagaatattgagagatcaggtagtgtgccattgattttatta 205  Q
    |||||||||||||||||| |||||||||| ||||||||| ||| ||||||| | |||||||||||| |||| ||| |||||||| || |||| ||||    
T  13472252 ttcaaatatcttcccgttgagtctattttcagaaatatcgaatgtttccaaaaatgagaatattgaaagattaggcagtgtgccgttaatttgatta 13472156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 14111178 - 14111382
Alignment:
Q  1 taattcctttaacattgacataccagaaaaatggacatcggagatcacaacattcaaagagttcgaacccatcaatagtatccatagtttagctggaaat 100  Q
    ||||||||||||||| ||||||||||||||||| |  || || |||||  || ||| ||||||||||||||||  || | ||| |||||| |||||||||    
T  14111178 taattcctttaacatcgacataccagaaaaatgaaattcagatatcactccactcatagagttcgaacccatctgtaatgtccttagtttggctggaaat 14111277  T
Q  101 cgaatatgttcaaatatcttcccgttcagtctattttgagaaatatcaaatatttccaagagtgagaatattgagagatcaggtagtgtgccattgattt 200  Q
     |||||| ||||  |||||||||  | ||  |||||| ||||||||||||||| ||||| | || ||||||||||||||||||||||||||| || ||||    
T  14111278 tgaatatcttcagctatcttcccacttagcttattttcagaaatatcaaatatctccaaaaatgggaatattgagagatcaggtagtgtgccgttaattt 14111377  T
Q  201 tatta 205  Q
     ||||    
T  14111378 gatta 14111382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 14015913 - 14016004
Alignment:
Q  132 tattttgagaaatatcaaatatttccaagagtgagaatattgagagatcaggtagtgtgccattgattttattactgcttagatctaattct 223  Q
    |||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14015913 tattttcagaaatatgaaatatttccaaaaatgagaatattgagagatcaggtagtgtgccattgattttattactgcttagatataattct 14016004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14015854 - 14015888
Alignment:
Q  1 taattcctttaacattgacataccagaaaaatgga 35  Q
    |||||||||||||||||||||||||| ||||||||    
T  14015854 taattcctttaacattgacataccagcaaaatgga 14015888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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