View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5454_low_2 (Length: 376)
Name: NF5454_low_2
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5454_low_2 |
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| [»] scaffold1636 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 356
Target Start/End: Complemental strand, 9938983 - 9938639
Alignment:
| Q |
13 |
aatatcgggagaaagaaatatgttcgagctgcaaatttgtttgtaataca-agttcaaaaatatcctcccctcaattacattttccgaataaagattaca |
111 |
Q |
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| T |
9938983 |
aatatcgggagaaagaaatatgtttgagctgcaaatttgtttgtaatacgcagtccaaaaatatcctcccctcaattacatttttcgaataaagattaca |
9938884 |
T |
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| Q |
112 |
tgggaatagactggttagaggacaactcaatggtcgaccaagaaagttacatacatcattttcagcacgcctataagcaactaagacatccagactcaac |
211 |
Q |
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| T |
9938883 |
tgggaatagaccagttagaggacaactcaatggtcgaccaagaaagttacatacatcattttcagcacgcctataagcaactaaggcatccagactcaac |
9938784 |
T |
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| Q |
212 |
tttgttaccatattgagtgcacagttatactatgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatataga |
311 |
Q |
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| T |
9938783 |
tttgttaccatattgagtgcacagttatactatgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatataga |
9938684 |
T |
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| Q |
312 |
tgtgagataccactttctcagagatcttacaaaagaaggggtggt |
356 |
Q |
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| T |
9938683 |
tgtgagataccactttctcagagatcttacagaagaaggagtggt |
9938639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 40609935 - 40609865
Alignment:
| Q |
244 |
tgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgt |
314 |
Q |
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| T |
40609935 |
tgtgataatagctcatcaataaagctatctaagaatccagtcatgcatggtagatgcaaacatatagatgt |
40609865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 329
Target Start/End: Complemental strand, 17536385 - 17536300
Alignment:
| Q |
244 |
tgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgagataccactttct |
329 |
Q |
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| T |
17536385 |
tgtgataatagttcaactatcaaactctccaagaacccagttttacatgggagaagtaaacacatagatgtgcgatatcattttct |
17536300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 244 - 350
Target Start/End: Complemental strand, 30967216 - 30967110
Alignment:
| Q |
244 |
tgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgagataccactttctcagagatcttacaa |
343 |
Q |
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| T |
30967216 |
tgtgataatagttcatctattaaactgcccaaaaatcctgtattgcatgggaagtgtaaacatatagatgttagataccactttctcagggatcttacaa |
30967117 |
T |
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| Q |
344 |
aagaagg |
350 |
Q |
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|| |||| |
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| T |
30967116 |
aataagg |
30967110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 319
Target Start/End: Original strand, 14178835 - 14178910
Alignment:
| Q |
244 |
tgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgagat |
319 |
Q |
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| T |
14178835 |
tgtgataatagttcctctataaagttgtctacgaaccctgtgatgcatgtaagatgcaagcacatagatgtgagat |
14178910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 347
Target Start/End: Original strand, 42971834 - 42971937
Alignment:
| Q |
244 |
tgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgagataccactttctcagagatcttacaa |
343 |
Q |
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| T |
42971834 |
tgtgataatagttcttccattaagctgtcaaaaaatcctatcatgcatgggagatgcaaacacattgatgttagataccattttctaagggaccttacta |
42971933 |
T |
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| Q |
344 |
aaga |
347 |
Q |
| |
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|||| |
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| T |
42971934 |
aaga |
42971937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 47144730 - 47144776
Alignment:
| Q |
271 |
tctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgag |
317 |
Q |
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| T |
47144730 |
tctaagaatccagttatgcatgggagatgcaagcatatagatgtgag |
47144776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1636 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1636
Description:
Target: scaffold1636; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 610 - 671
Alignment:
| Q |
287 |
tgcatgggagatgcaaacatatagatgtgagataccac-tttctcagagatcttacaaaaga |
347 |
Q |
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| T |
610 |
tgcatggaagatgcaaacatatagatgtgaggtatcacttttttgagggatcttacaaaaga |
671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 329
Target Start/End: Complemental strand, 45825319 - 45825234
Alignment:
| Q |
244 |
tgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgagataccactttct |
329 |
Q |
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| T |
45825319 |
tgtgataatagttcaactatcaaactctccaagaacccagttttacatgggagaagtaaacacatagatgtgcgatatcattttct |
45825234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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