View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5454_low_20 (Length: 216)

Name: NF5454_low_20
Description: NF5454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5454_low_20
NF5454_low_20
[»] chr4 (3 HSPs)
chr4 (1-160)||(32517314-32517473)
chr4 (155-200)||(32517213-32517258)
chr4 (75-127)||(21636186-21636238)
[»] chr3 (2 HSPs)
chr3 (86-128)||(11508414-11508456)
chr3 (86-127)||(53275310-53275351)
[»] chr2 (1 HSPs)
chr2 (75-127)||(37804340-37804392)
[»] chr1 (1 HSPs)
chr1 (75-127)||(12043619-12043671)
[»] chr6 (2 HSPs)
chr6 (50-125)||(5453075-5453150)
chr6 (75-117)||(7255615-7255657)
[»] chr5 (2 HSPs)
chr5 (82-126)||(35585322-35585366)
chr5 (97-127)||(9636578-9636608)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 32517473 - 32517314
Alignment:
Q  1 tctatgaattataattttttcaatcttatttataagaaacattttagccaacaatagttagtatatttagctataaaattgaatcaaatacattaatttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  32517473 tctatgaattataattttttcaatcttatttataagaaacattttaaccaacaatagttagtatatttaactataaagttgaatcaaatacattaatttt 32517374  T
Q  101 tgttaactcaaatatcttttataaatatttttgagtttcatattgtttgacaccctcctc 160  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32517373 tgttaactcaaatatcttttataaatatttttgagtttcatgttgtttgacaccctcctc 32517314  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 32517258 - 32517213
Alignment:
Q  155 ctcctcagcttgtcgtggtttaatttgagattcgtttgacaatttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32517258 ctcctcagcttgtcgtggtttaatttgagattcgtttgacaatttc 32517213  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 21636186 - 21636238
Alignment:
Q  75 aaaattgaatcaaatacattaatttttgttaactcaaatatcttttataaata 127  Q
    ||||||||| |||||||||||||||||||| | |||||| ||| |||||||||    
T  21636186 aaaattgaagcaaatacattaatttttgttgattcaaatgtctcttataaata 21636238  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 11508414 - 11508456
Alignment:
Q  86 aaatacattaatttttgttaactcaaatatcttttataaatat 128  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  11508414 aaatacattaatttttgttgactcaaatatcttttataaatat 11508456  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 53275351 - 53275310
Alignment:
Q  86 aaatacattaatttttgttaactcaaatatcttttataaata 127  Q
    |||||||| |||||||||| || |||||||||||||||||||    
T  53275351 aaatacatcaatttttgttgacccaaatatcttttataaata 53275310  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 37804392 - 37804340
Alignment:
Q  75 aaaattgaatcaaatacattaatttttgttaactcaaatatcttttataaata 127  Q
    |||||||||||| ||| ||||||||||||| |||||||| |||||||||||||    
T  37804392 aaaattgaatcagatatattaatttttgttgactcaaatttcttttataaata 37804340  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 12043671 - 12043619
Alignment:
Q  75 aaaattgaatcaaatacattaatttttgttaactcaaatatcttttataaata 127  Q
    ||||||||||||||||||| || ||||||| ||| ||||||||||||||||||    
T  12043671 aaaattgaatcaaatacatcaacttttgttgacttaaatatcttttataaata 12043619  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 5453150 - 5453075
Alignment:
Q  50 aacaatagttagtatatttagctataaaattgaatcaaatacattaatttttgttaactcaaatatcttttataaa 125  Q
    ||||| ||||| ||||||||| || ||||||| |||| ||||||| ||||||| | |||||||||||| |||||||    
T  5453150 aacaaaagttaatatatttagttaaaaaattggatcagatacattcatttttgctgactcaaatatctcttataaa 5453075  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 7255657 - 7255615
Alignment:
Q  75 aaaattgaatcaaatacattaatttttgttaactcaaatatct 117  Q
    ||||||| |||||||||||||| |||||||| |||||||||||    
T  7255657 aaaattggatcaaatacattaacttttgttagctcaaatatct 7255615  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 35585366 - 35585322
Alignment:
Q  82 aatcaaatacattaatttttgttaactcaaatatcttttataaat 126  Q
    |||||||||||| |||||||||| | |||||||||||||||||||    
T  35585366 aatcaaatacatcaatttttgttgattcaaatatcttttataaat 35585322  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Original strand, 9636578 - 9636608
Alignment:
Q  97 tttttgttaactcaaatatcttttataaata 127  Q
    |||||||||||||||||||||||||||||||    
T  9636578 tttttgttaactcaaatatcttttataaata 9636608  T

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